Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq80422 104 2e-17 seq2110 82.4 7e-11 >seq80422 Length=4294 Score = 104 bits (114), Expect = 2e-17 Identities = 122/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 38390 AACTAGACATT--TGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447 ||||| |||| || ||| ||||||||| || ||||| | ||||||||||||||| | Sbjct 1468 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 1409 Query 38448 GAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTG 38507 ||||||| ||| |||| || ||| ||| || || ||| |||||| | ||| Sbjct 1408 GAACCATCTTTGGGACATCATATGGTATATTTTAATAGCAGAATCAATATCATCCTTGTG 1349 Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551 ||| || | ||| |||||||| | |||||| || |||||||||| Sbjct 1348 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTA 1305 >seq2110 Length=919 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 ||| ||||| || ||||| | ||| ||||||||||| | |||||| || |||| Sbjct 380 TGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCAT 321 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 || ||||||| || || ||| || ||| | |||||| || | || |||||||| Sbjct 320 ATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGCAACCCTCAT 261 Query 38529 TAGCATATGTTGTGGTCTTTCTA 38551 | ||||||||| |||||||||| Sbjct 260 CAACATATGTTGGGGTCTTTCTA 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467128080718720