Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq68514 107 2e-18
seq43799 102 8e-17
seq13742 100 3e-16
seq71848 98.7 1e-15
seq72069 93.3 4e-14
seq43779 93.3 4e-14
seq43778 93.3 4e-14
seq208088 91.5 1e-13
seq68470 86.0 6e-12
>seq68514
Length=8688
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| || |||||||||||||| |||||| || |||| ||||||||| || || ||
Sbjct 8185 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCG 8126
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| |||| ||||| ||||| || || || || || || ||||| ||| || ||
Sbjct 8125 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 8066
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | |||||||| | |||||| || | ||| | ||||||||||| | |||
Sbjct 8065 ACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 8006
Query 139748 TTTACGAATATTTGCAT 139764
|| || ||||| |||||
Sbjct 8005 TTCACAAATATCTGCAT 7989
>seq43799
Length=2218
Score = 102 bits (112), Expect = 8e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||| | || || || || || || ||||| || | ||||| || |||
Sbjct 1009 ACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCAGCAAGTGTGCGACCATCCTCG 1068
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||||||||||||| |||| || | |||||||| || || || ||||| ||||| |
Sbjct 1069 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGG 1128
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || ||||| | || | ||||||| | || ||||||| ||| | ||||||
Sbjct 1129 ATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTG 1188
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | ||||| || || ||||||||
Sbjct 1189 CCGGTGAGAGTTTTCACAAAGATTTGCAT 1217
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | || ||||| || || |||||||||||
Sbjct 763 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGCA 822
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||||| || |||||||||||||| ||| |||| || | ||||| || || ||
Sbjct 823 AGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 882
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| | || | ||| | | || | ||||||| | |||||
Sbjct 883 ATCCCTTCCTTGTC-CTGAATCTTGGCTTTCACATTGTCAATGGTGTCGGAGCTTTCCAC 941
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| || | ||||||||| || | || ||||| || || ||||||
Sbjct 942 CTCAAGAGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 990
>seq13742
Length=406
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
|||||| || | ||| | || | ||| | || ||||| || || ||||| |||||
Sbjct 139 GCCGCCGCGGAGACGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 198
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| | ||| |||||||| || || || ||||||| || ||||| || || ||
Sbjct 199 CAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 258
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| || || | | || | |||||| | ||||||
Sbjct 259 AATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCGAAGCTCTCCAC 318
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | || | |||||||||||||| ||||| || || || |||||
Sbjct 319 CTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCACAAAGATCTGCAT 366
>seq71848
Length=4061
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| ||||||||||| |||||| | || | || |||||||| || ||
Sbjct 3604 GTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCG 3663
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
|| |||| || | ||||| || ||||| || || |||||||| ||| || ||
Sbjct 3664 GCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTC 3723
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||||| | ||||||||| | ||| | |||||| |||||||||||
Sbjct 3724 ACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTC 3783
Query 139748 TTTACGAATATTTGCAT 139764
|| ||||| || |||||
Sbjct 3784 TTGACGAAGATCTGCAT 3800
Score = 95.1 bits (104), Expect = 1e-14
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609
||||| || | ||| | ||| || || || || |||||||||||| || |||| |
Sbjct 3814 CGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCCAGGGTGCGGCCG 3873
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| || ||||| || || || |||| || | ||||| || || || || ||||| |||
Sbjct 3874 TCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATCCCTTCCTTG 3933
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||||| | ||||||||| | ||| | |
Sbjct 3934 TCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATC 3993
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| ||||||| || || ||||| || |||||
Sbjct 3994 GTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 4028
>seq72069
Length=2032
Score = 93.3 bits (102), Expect = 4e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||||| ||| ||||| ||||||||||||||||| | || || |||||
Sbjct 308 ACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCTGCCATCTTCC 249
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671
| |||||||||||| | ||||| | |||||||| ||||| |||||||| |||||
Sbjct 248 AATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 193
>seq43779
Length=2831
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615
|| ||||||| || ||||| || || |||||||| || | |||| || |||
Sbjct 211 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGACCATCCTCG 270
Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675
||||||||||| ||| |||| || | |||||| || || || || ||||| || || |
Sbjct 271 AGCTGTTTACCGGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 330
Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735
|| || ||||| | || | ||||| | | || ||||||| ||| | ||||||
Sbjct 331 ATCTTGGCTTTTACGTTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 390
Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | || || || || ||||||||
Sbjct 391 CCGGTGAGAGTCTTCACAAAGATTTGCAT 419
>seq43778
Length=4696
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608
||| | ||| ||||| | || ||||| || || |||||||||||| | |||| |
Sbjct 3972 ACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGGGTGCGCCC 4031
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
|| || ||||||||||||||| |||| || | |||||||| || || || ||||| ||
Sbjct 4032 ATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTT 4091
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
||| ||| || ||| | | || | || || | | || ||||||| ||| |
Sbjct 4092 GTCCTGGATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCAACCTCAAGGGTTAT 4151
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|| || ||||| | || || || || ||||||||
Sbjct 4152 GGTTTTTCCGGTGAGAGTCTTCACAAAGATTTGCAT 4187
>seq208088
Length=533
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| || ||| | || | ||| | || ||||| || ||||||||||| |||
Sbjct 121 CCACCTCTTAGACGGAGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCA 180
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| || || || ||||| |||||| | || || | |||||| || || ||
Sbjct 181 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 240
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| ||| |||| | ||| | | || | ||||||| | |||||
Sbjct 241 ATCCCTTCCTTGTC-CTGAATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCAC 299
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| ||| | ||||| || || | || ||||| || || ||||||
Sbjct 300 CTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 348
>seq68470
Length=2690
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608
||| | ||| | ||| | || ||||||||||||||||| |||||| || ||||
Sbjct 878 ACGAAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAATCGGCCAAGGTGCGGCC 819
Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668
||||| | ||| ||||| || |||||| | |||||| || || || || || |||||
Sbjct 818 ATCTTCCAACTGCTTACCGGCGAAGATCAATCTTTGCTGGTCCGGCGGGATCCCCTCTTT 759
Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728
||| ||| || || | | || | || || | ||||||||| | || |
Sbjct 758 GTCCTGGATCTTGGCCTTGACGTTATCAATCGTATCCGAACTCTCCACCTCCAGAGTGAT 699
Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||||| || || | ||||| ||||| || ||||||
Sbjct 698 CGTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCATA 662
Score = 86.0 bits (94), Expect = 6e-12
Identities = 142/200 (71%), Gaps = 4/200 (2%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626
|| ||||| || |||||||||||||| ||| | || | || || ||||| || ||
Sbjct 1315 GTGGACTCCTTCTGAATGTTATAATCAGCT-AAAGTACGGCCATCCTCAAGCTGCTTCCC 1257
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686
|||| |||| || | |||||||| || || || ||||| ||||| ||| | |||| |
Sbjct 1256 AGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTC-CTGAATCTTTGCCT 1198
Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745
|| | | || | || || | | ||||||||| | || | ||||| || ||||| |
Sbjct 1197 TAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTAATAGTCTTCCCAGTCAAGG 1138
Query 139746 TTTTTACGAATATTTGCATA 139765
| || || ||||| ||||||
Sbjct 1137 TCTTGACAAATATCTGCATA 1118
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| || |||| ||| | || | || | || ||||| || || ||||| ||||||
Sbjct 434 GCCTCCGCGTAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGC 375
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
|| |||| ||| ||||||||||| ||||| |||| || | ||||| || || ||
Sbjct 374 CAAGGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGG 315
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|| || || ||||| ||| | || | || | | || | ||||||| | ||| |
Sbjct 314 AATTCCCTCCTTGTC-TTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 256
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| || | || | || |||||||||| ||||| ||||| || |||||
Sbjct 255 CTTCGAGAGTAATAGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 207
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494585183609600
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