Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq89547 178 2e-39 seq235167 122 1e-22 seq80422 89.7 7e-13 seq589 86.0 9e-12 >seq89547 Length=5293 Score = 178 bits (196), Expect = 2e-39 Identities = 413/620 (67%), Gaps = 2/620 (0%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || || |||||||||||||| |||||||| |||| || | || || || | Sbjct 2834 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGA 2893 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC-AAATGACCCA 50070 |||| | ||| ||||||| || |||||||| ||||||||||| | ||| ||| ||| Sbjct 2894 ACGTCAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 2952 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || ||||| || || || || ||||| || | | |||||| || || | | | Sbjct 2953 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAG 3012 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | | ||||| ||| ||||| ||| |||||| || || || | ||| || ||| Sbjct 3013 CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATG 3072 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 3073 GCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAG 3132 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| || || ||||| || ||||| ||||| || |||||||| | |||||| Sbjct 3133 TACATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCG 3192 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | | ||| || || || || | | | || | || || || || ||||| | Sbjct 3193 GCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 3252 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 |||||||| || || | || || | | || || || |||| | ||||| | | Sbjct 3253 GCTGCAAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCC 3312 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | || ||||| || | ||| ||||| || | |||||||| || || || || Sbjct 3313 CAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCT 3372 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || || ||||| | ||| || | |||| || || ||||| || ||||| || ||| Sbjct 3373 TTCTTGTACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATCGATCGGGA 3432 Query 50551 TTTGGTGCAAGGATCGGTTC 50570 ||||| || || | ||| || Sbjct 3433 TTTGGGGCTAGAAGCGGCTC 3452 >seq235167 Length=544 Score = 122 bits (134), Expect = 1e-22 Identities = 257/378 (68%), Gaps = 8/378 (2%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || |||||||||||||| || || || |||| ||||| ||||| || | Sbjct 98 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 157 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || || || ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 158 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCC 216 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127 || ||||| || ||||| || |||||| || | |||||||| | || || | | Sbjct 217 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 276 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| ||| | |||||||||||||| || || || |||| |||||| Sbjct 277 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 333 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 | ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 334 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 393 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 394 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 453 Query 50308 TCGGTAATCTGCACTTCT 50325 |||| | || |||||| Sbjct 454 TCGGAGACTTGGACTTCT 471 >seq80422 Length=4294 Score = 89.7 bits (98), Expect = 7e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| |||||||| | |||||||| || || || |||||| ||| |||| | || Sbjct 1444 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1385 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| | | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 1384 GTATATTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1326 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTT 80480 |||| |||||||||||||| || | ||| Sbjct 1325 ACATATGCTGAGGTCTTTCTACAACCTT 1298 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 1773 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 1714 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| || || || || ||||| |||||| | |||||||| || || ||| Sbjct 1713 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 1654 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 1653 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 1594 Query 80275 CCCTCTATGCTATCATCAATCAT 80297 || || || |||||||| |||| Sbjct 1593 CCTTCGATACTATCATCTTTCAT 1571 >seq589 Length=4664 Score = 86.0 bits (94), Expect = 9e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || |||||||| ||||| || || || |||| ||||| | ||| || | Sbjct 4352 ACAACAAGCACGCGAAATCACAGTGGAGTCCTTCATCTCGCGAGATTAGCTTGTTCGAGA 4411 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || || || | ||||| || |||||||| | | ||||||| ||||| || || Sbjct 4412 AGGTTAGGCCCGACATTAACCCGCGCTTTTTCAACTAAAATATC-ACGCAGAAACTGCCT 4470 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || ||||| || ||||| || ||||| || | |||||||| | | | | | Sbjct 4471 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 4530 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 50186 ||| ||||| ||| | |||||||||||||| || || || ||| |||||| Sbjct 4531 CCATCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACCGCACCGTTTC 4586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716127568880320