Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq102355 95.1 1e-14 seq235167 87.8 2e-12 seq590 82.4 7e-11 >seq102355 Length=2235 Score = 95.1 bits (104), Expect = 1e-14 Identities = 84/104 (81%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||||||||| |||||||||||| ||||| |||||||| || || || Sbjct 1044 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 985 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||||| ||| | ||||| | ||| ||||| ||| |||| Sbjct 984 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA-CAAA 942 >seq235167 Length=544 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/164 (74%), Gaps = 8/164 (5%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 103 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 162 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATAT--TGCAGCAAATGACCCGGAAA 13986 | || ||||| || || || ||||| ||||||||||| |||| || || || || | Sbjct 163 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTG--CCCGAGA 220 Query 13987 AGAATATTCCCTCAACTGCA-GCAAACGCTATTAATCGTTCTCC 14029 ||||||| || || || ||| ||||||||||| | || ||||| Sbjct 221 AGAATATCCCTTCCAC-GCAGGCAAACGCTATCAGTC--TCTCC 261 >seq590 Length=6039 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/164 (73%), Gaps = 8/164 (5%) Strand=Plus/Plus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || ||||| |||| ||||| || || ||||||| || || |||||||| || || Sbjct 1316 AAGCACGCGAAATGGCAATGGAGTCCTTCATCTCGCAAGATTAGCTCGTTTGAGAAGATT 1375 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGC--AGCAAATGACCCGGAAA 13986 | || ||||| || | || ||||||||||| ||||| || || || || || |||| Sbjct 1376 AGCCCCGGCATTAACCTGCGCTTTTTTAACCACAATATCGCGCAGAAACTGCCCGAGAAA 1435 Query 13987 AGAATATTCCCTCAACTGCAG-CAAACGCTATTAATCGTTCTCC 14029 | |||| || || || |||| |||||||||||| || ||||| Sbjct 1436 A--ATATCCCTTCGAC-GCAGGCAAACGCTATTAGTC--TCTCC 1474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478297882859200