Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq102355 93.3 4e-14 seq235167 89.7 5e-13 seq590 84.2 2e-11 >seq102355 Length=2235 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||||||||| |||||||||||| ||||| |||||||| || || || Sbjct 1044 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 985 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||| ||| | ||||| | ||| ||||| ||| Sbjct 984 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA 946 >seq235167 Length=544 Score = 89.7 bits (98), Expect = 5e-13 Identities = 119/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 103 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 162 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 | || ||||| || || || ||||| ||||||||||| || ||| || || ||| Sbjct 163 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 222 Query 13777 AATATTCCCTCAACTGCA-GCAAACGCTATTAGTCGTTCTCC 13817 ||||| || || || ||| ||||||||||| |||| ||||| Sbjct 223 AATATCCCTTCCAC-GCAGGCAAACGCTATCAGTC--TCTCC 261 >seq590 Length=6039 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 || ||||| |||| ||||| || || ||||||| || || |||||||| || || Sbjct 1316 AAGCACGCGAAATGGCAATGGAGTCCTTCATCTCGCAAGATTAGCTCGTTTGAGAAGATT 1375 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 | || ||||| || | || ||||||||||| ||||| || ||| || || || Sbjct 1376 AGCCCCGGCATTAACCTGCGCTTTTTTAACCACAATATCGCGCAGAAACTGCCCGAGAAA 1435 Query 13777 AATATTCCCTCAACTGCAG-CAAACGCTATTAGTCGTTCTCC 13817 ||||| || || || |||| ||||||||||||||| ||||| Sbjct 1436 AATATCCCTTCGAC-GCAGGCAAACGCTATTAGTC--TCTCC 1474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477162078928320