Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq68514 95.1 1e-14 seq68470 91.5 1e-13 seq43799 86.0 6e-12 >seq68514 Length=8688 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || || | |||||||||||| || || Sbjct 789 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCG 730 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| | ||||| |||||||| || || || ||||| || || || Sbjct 729 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 670 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | || | |||||| ||||||| ||| Sbjct 669 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTCAGGGTT 610 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 609 TTGACGAAGATCTGCAT 593 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || |||| |||||||||||| || || Sbjct 8185 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCG 8126 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| ||||| || || || || || || ||||| || || || Sbjct 8125 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 8066 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| | ||| Sbjct 8065 ACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 8006 Query 143168 TTTACGAATATTTGCAT 143184 || || ||||| ||||| Sbjct 8005 TTCACAAATATCTGCAT 7989 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| || |||| ||||||||||| || || Sbjct 561 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 502 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| |||||||| ||||| || || || ||||| || || || Sbjct 501 GCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 442 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | ||| | ||| |||||||| | ||| Sbjct 441 ACGTTGTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 382 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 381 TTCACGAAGATCTGCATA 364 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 |||||| || | ||||| || || || || || ||||||||||| | || || Sbjct 8432 ACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCC 8373 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || || || || ||| ||||||| || |||||||| || || || ||||| || Sbjct 8372 ATCCTCCAGCTGCTTCCCTGCAAAGATCAGGCGCTGCTGATCAGGTGGGATCCCTTCCTT 8313 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| |||||| || | | || | ||||| | | || ||||| | ||| | Sbjct 8312 GTCCTGGATTTTTGCCTTGATGTTGTCAATGGTGTCAGAGCTCTCGACTTCCAGAGTGAT 8253 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || |||| ||||| ||||| || ||||| Sbjct 8252 CGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 8217 >seq68470 Length=2690 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| |||| ||| | || | ||| | || || || || ||||||||||||||| Sbjct 434 GCCTCCGCGTAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGC 375 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| ||||| ||||| ||||| |||| || | ||||| || || || Sbjct 374 CAAGGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGG 315 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| ||| || || | | || | ||||| | | || || Sbjct 314 AATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 255 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | || |||||||||| ||||| ||||| || ||||| Sbjct 254 TTCGAGAGTAATAGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 207 >seq43799 Length=2218 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034 || ||||||| || ||||| || || |||||||| || | ||||| || | || || Sbjct 553 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCA-TCCTC 611 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||||| ||| |||| || | |||||| || || || || ||||| || || Sbjct 612 TAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTG 671 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||| | | || | ||||| | | ||| || |||| || | ||||| Sbjct 672 AATTTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCCACCTCAAGGGTGATAGTCTT 731 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || ||||| || || |||||| Sbjct 732 TCCAGTGAGGGTCTTTACAAAGATCTGCATA 762 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || ||||| |||||||||||| |||| || | |||||||| || || || ||||| ||| Sbjct 1063 TCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTG 1122 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||||| | || | ||||| | | ||| || |||| || | Sbjct 1123 TCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATT 1182 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| | ||||| || || |||||||| Sbjct 1183 GTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 1217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505502939372160