Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq89547 125 1e-23 >seq89547 Length=5293 Score = 125 bits (138), Expect = 1e-23 Identities = 395/596 (66%), Gaps = 26/596 (4%) Strand=Plus/Minus Query 124987 GATTTACCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGG 125046 ||||| | |||| || || ||||| | ||||||||||||||||| || || | | Sbjct 3424 GATTTTGCATGTTCCCGATTCAGTATCCACAAATTTGGGAAATGTACAAGAAAGCCGAAG 3365 Query 125047 CCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTC 125106 | || |||||||| | || || || ||||| || | || || | | |||||| | | Sbjct 3364 CGTCGTTTTGGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCACTGGGAGGCCC 3305 Query 125107 GTTTGACTGAAACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGC 125162 | || | |||| ||||| || | ||||| | | ||||||||||| | | Sbjct 3304 ---TAACCG---CTGA-CGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTTGCAGCC 3252 Query 125163 TCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCAT-TC- 125220 ||||| || |||||| ||| || || | | ||| ||| | ||| || Sbjct 3251 TCCGACGGCATCGTCCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGT--CCAGGTCG 3194 Query 125221 CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATG 125279 | |||| | ||||| || ||||| ||||| ||| || |||||| | ||||| |||||| Sbjct 3193 CCGAGGCG-CGTGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAAATG 3135 Query 125280 TACTCTACACTGATTGACATGTACATTCGCGA-TCCGCAACGTAAACACATG-CTCTTTA 125337 ||||| || | || | ||||| || |||| ||| ||| | | |||||| Sbjct 3134 TACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCG--ACGAAAAGAACCGTCTCTTTC 3077 Query 125338 ACGCAATCGACACGGTGCCGTCTATACGTAAA-AAGGCTCAATGGGTGATTCGGTGGATC 125396 |||| ||||| ||||| || | | || ||| || || |||| | | |||||| Sbjct 3076 ACGCCATCGAGACGGTTCCCTGCGT-CGCAAAGAAAGCCACGTGGGCGTTAAATTGGATC 3018 Query 125397 GATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATC 125456 || | | || ||| || || ||| | | || || || ||| ||||| || Sbjct 3017 GACGGCTCGGAGACTTTT---GCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATT 2961 Query 125457 TTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGA 125516 ||||| || || |||||| || || ||||||||||| |||||||| | ||||| ||| Sbjct 2960 TTCTTCTCAGGGAGTTTTTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGA 2901 Query 125517 CTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 ||||| | || ||||| || || ||||| ||||| || ||||| || || || Sbjct 2900 TTGACGTTCTCAAATGAGTTGATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGC 2845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738850028418880