Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq68470 98.7 7e-16 seq43778 96.9 3e-15 seq68514 87.8 1e-12 >seq68470 Length=2690 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| |||| | | ||| | ||||||||| || || || || ||||| ||||| Sbjct 1117 CCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCA 1058 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | || | || || | |||||||||||| | |||||||| || || || |||| Sbjct 1057 AGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGA 998 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || ||||| ||| ||| | || || || || | || || Sbjct 997 ATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACT 938 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| ||||| || || || || || ||||| || ||||| Sbjct 937 TCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 891 >seq43778 Length=4696 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| || || || ||||| ||||| || | || | ||||| Sbjct 3066 AACCAAGTGAAGGGTGGACTCCTTCTGAATGTTATAATCTGCAAGGGTCCTACCATCTTC 3125 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || |||||||| | ||||| | || |||||| ||||| || || || || Sbjct 3126 AAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCGGGAGGAATGCCCTCCTTATCTTG 3185 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | |||||||| || | |||| || || || || ||||| || Sbjct 3186 GATCTTGGCCTTCACATTATCTATGGTGTCTGAACTTTCCACCTCCAAAGTGATGGTCTT 3245 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || |||| ||| || ||||| || |||||| Sbjct 3246 CCCAGTCAAAGTCTTCACAAAGATCTGCATA 3276 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || || || |||||||| || |||| | | | ||||| Sbjct 3523 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGGCCATCTTCA 3582 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | ||||| | || || ||| || || || || ||||| | Sbjct 3583 AGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTGA 3642 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || || || |||| || || || || || |||||| Sbjct 3643 ATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTTTTA 3702 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||||| ||||| |||||||| |||||| Sbjct 3703 CCAGTCAGGGTTTTCACAAAAATCTGCATA 3732 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||||||||| || || || || |||||||| || || | | | || || Sbjct 3751 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 3810 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | || | | ||| ||||| ||| || ||||| || || | Sbjct 3811 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 3870 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| | || ||||| || |||| || || | ||||||||| || Sbjct 3871 ATTTTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCTTT 3930 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || |||||||| |||||||| Sbjct 3931 CCAGTGAGGGTCTTTACAAAGATTTGCAT 3959 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || | || ||| || || ||||| | ||||| || || || ||||||||||| Sbjct 2821 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCTGCA 2880 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | ||| | ||||| | || ||||| || | ||||| | || ||||| |||| Sbjct 2881 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGA 2940 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || || ||| ||| ||| | || || || || | | ||||| Sbjct 2941 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACC 3000 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || || ||||| || || ||||| || |||||||||||||| Sbjct 3001 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 3047 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||||| || || || || ||||| ||| || | || | ||||| Sbjct 3295 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 3354 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | || | | || ||||| || || ||||| ||||| | Sbjct 3355 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 3414 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || ||| | || || ||||| | | || || |||||||||||||| || Sbjct 3415 ATCTTAGCT-TTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTT 3473 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| || ||||| ||||||||| Sbjct 3474 GCCAGTAAGAGTCTTAACAAAGATTTGCATA 3504 >seq68514 Length=8688 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| |||||||| || ||||| ||||| ||||| || | | |||| |||| || Sbjct 1252 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 1193 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 || |||||| | || | | || || || |||||| ||||| ||||| ||| || Sbjct 1192 CTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 1133 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| ||| ||| | || || ||||| | | || || || | ||||| || || || | Sbjct 1132 TGC-CTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAG 1074 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 ||| ||| || |||||||||||||| Sbjct 1073 TCAAAGTCTTGACAAAAATTTGCAT 1049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361126499897208