Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq235167 105 6e-18 seq589 105 6e-18 seq590 87.8 2e-12 >seq235167 Length=544 Score = 105 bits (116), Expect = 6e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || || || ||||| ||||| | ||||||||||| ||||||||||| || | Sbjct 98 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 157 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 | ||||| |||||||| | ||| || ||||| | ||||||||| || ||| || ||| Sbjct 158 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGC-GCAGAAACTGCCC 216 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCA 13298 || || ||||| ||||| || ||||||||||||| Sbjct 217 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCA 253 >seq589 Length=4664 Score = 105 bits (116), Expect = 6e-18 Identities = 306/461 (66%), Gaps = 14/461 (3%) Strand=Plus/Plus Query 12845 GACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCT 12904 ||||| ||||| ||||| ||||| | ||||| || ||||| || || || || ||| Sbjct 4054 GACATCACAGAAGCCTTTTGGTATTCCCCGACTCTCTTCTCAAAGAAATTCGTCTTCCCT 4113 Query 12905 TCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACAC 12964 | | |||||| ||||| |||| || ||||| || | || || ||| Sbjct 4114 TGCAGCGAAATCAACTCCATCCAATCAAATGGATTCGTCACGCCGTACACCTTCCCGCAC 4173 Query 12965 CCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAG 13024 || | | ||||| || || || ||||||||||||||||| |||| || | | | Sbjct 4174 CCGAGCGCACCCAACAACCTATCTGCCACAAACTCTATGTACTGACTCATCAACGCCCCG 4233 Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 ||||| || | ||| |||| || || | || | | |||||||| ||| Sbjct 4234 TTCATCCCCACCAATGCGCACGGCAGCGCGTCGCACACGAACTCCCTCTCTATATCCACT 4293 Query 13085 GCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----AG-ATGCT 13139 || || | ||||| | ||| |||| ||| || ||||| | || | ||| Sbjct 4294 GCCTCCTTCACTATCCC-CTT--TACGCGCTCCT-TGCTTAATTTGTTCCTCAGTAAGCT 4349 Query 13140 TAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTG 13199 | || || || || ||||||||||| | ||||||||||| ||||||| ||| | Sbjct 4350 GTA-CAACAAGCACGCGAAATCACAGTGGAGTCCTTCATCTCGCGAGATTAGCTTGTTCG 4408 Query 13200 AAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATAT--AGCAGCAAACGA 13257 | || ||||| |||| ||| | ||| || ||||| | | ||||||| |||| |||| Sbjct 4409 AGAAGGTTAGGCCCGACATTAACCCGCGCTTTTTCAACTAAAATATCACGCAG-AAAC-T 4466 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCA 13298 || || || ||||| ||||| || ||||||||||||| Sbjct 4467 GCCTGAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCA 4507 >seq590 Length=6039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAA 13202 ||| || || || |||| || || | ||||||||||| |||||||||||||| | Sbjct 1311 ACAACAAGCACGCGAAATGGCAATGGAGTCCTTCATCTCGCAAGATTAGCTCGTTTGAGA 1370 Query 13203 ATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCC 13261 | |||| |||||||| | || || ||||| | ||| ||||| || ||| || ||| Sbjct 1371 AGATTAGCCCCGGCATTAACCTGCGCTTTTTTAACCACAATATCGC-GCAGAAACTGCCC 1429 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTAT 13296 || |||||||| ||||| || ||||||||||| Sbjct 1430 GAGAAAAATATCCCTTCGACGCAGGCAAACGCTAT 1464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429729718408176