Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq13742 105 6e-18 seq68153 96.9 3e-15 seq68152 96.9 3e-15 seq68514 93.3 4e-14 seq43778 89.7 4e-13 seq68470 82.4 6e-11 >seq13742 Length=406 Score = 105 bits (116), Expect = 6e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| ||| ||||||| |||||||| ||| || | Sbjct 175 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 234 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | | |||||||||| || || ||||| | Sbjct 235 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 294 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | || || ||| |||| ||||| || ||||| || ||||| | ||||||||| Sbjct 295 GTCGATCGTGTCGAAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCAC 354 Query 48715 AAAAATCTGCATC 48727 ||| ||||||||| Sbjct 355 AAAGATCTGCATC 367 >seq68153 Length=714 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| |||||||||||||||| ||| || ||| ||||||| |||| Sbjct 82 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGAGTACGCCCGTCCTCAAGCT 140 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | | ||||||||| || | | |||||||||| ||| | Sbjct 141 GCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCT 200 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | |||||||| | | |||| ||| | || || || || |||| Sbjct 201 TGGCCTTGACGTTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 260 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || |||||||||||||| Sbjct 261 TCAATGTCTTGACAAAAATCTGCAT 285 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TC 48573 ||||| | |||||| || ||||| |||||||||||||| || || ||| || || Sbjct 302 AACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGC-AAGCGTCCTTCCATC 360 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 |||||||||||| || || | || ||||||||||| ||| ||| | | ||||||||| Sbjct 361 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTC 420 Query 48634 CATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691 | || || ||||| | | || || || |||| ||| |||| ||| || Sbjct 421 CTGGATCTTGGCCTTGACGTTGTCG--ATCGTGTCGGAGCTCTCAACTTCGAGTGTGATC 478 Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || || ||||| || || |||||||| Sbjct 479 GTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 513 >seq68152 Length=1216 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCT 48581 ||| || ||| |||||| |||||||||||||||| ||| || || ||||||| |||| Sbjct 958 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAG-CAAGAGTACGGCCGTCCTCAAGCT 1016 Query 48582 GCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTT 48641 |||| || || | || | | ||||||||| || | | |||||||||| ||| | Sbjct 1017 GCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCT 1076 Query 48642 TCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 | ||||| | | |||||||| | | |||| ||| | || || || || |||| Sbjct 1077 TGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 1136 Query 48702 TGAGAGTTTTCACAAAAATCTGCAT 48726 | | || || |||||||||||||| Sbjct 1137 TCAATGTCTTGACAAAAATCTGCAT 1161 >seq68514 Length=8688 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || ||||||||||||||||| ||||| || |||| || || ||||| ||| | | Sbjct 8179 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAG 8120 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | ||||||||| ||| ||| | | ||||||||| || || ||||| | | Sbjct 8119 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 8060 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || || || |||| |||| |||| || || || || |||||||| ||||||| Sbjct 8059 TCG--ATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCA 8002 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 8001 CAAATATCTGCATC 7988 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||||||||||||||| |||||||| || || | ||||| ||||| Sbjct 8648 ATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCTG 8589 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | | |||||| ||| ||| || Sbjct 8588 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 8529 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | | |||| ||| | || || ||||| || || Sbjct 8528 AGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAGGGTAATTGTTTTCCCAGT 8469 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||| Sbjct 8468 AAGAGTCTTGACGAAAATCTGCAT 8445 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| || | || || || ||||| ||| || | Sbjct 556 CTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAA 497 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | ||||||||||||| || | | ||||||||| || || ||||| | Sbjct 496 GATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 437 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||| |||| || || ||||| ||||| || |||||| Sbjct 436 GTCG--ATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTC 379 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 378 ACGAAGATCTGCAT 365 >seq43778 Length=4696 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || ||||| |||||||| ||| | |||||||||||||| ||| | | Sbjct 2628 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAA 2687 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | ||||||||| || | | |||||||||| ||||| ||| | | Sbjct 2688 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 2747 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | | ||| ||| | || |||||||| || || | || ||||| Sbjct 2748 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCTGTCAATGTCTTCAC 2807 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 2808 GAAAATCTGCAT 2819 >seq68470 Length=2690 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| || ||||||| ||||| || || || | Sbjct 398 CTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAA 339 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | | |||||| ||| || | | |||||||| ||| ||| ||||| | Sbjct 338 GATAAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 279 Query 48653 GACGCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTT 48710 | || ||||| |||| || ||| || | |||| || || ||||| ||||| || |||| Sbjct 278 GTCG--ATGGTGTCGG-AG-CTCTCGACTTCGAGAGTAATAGTTTTGCCGGTCAGGGTTT 223 Query 48711 TCACAAAAATCTGCAT 48726 |||| || |||||||| Sbjct 222 TCACGAAGATCTGCAT 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420026802846488