Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq99360 111 8e-20 seq13001 111 8e-20 seq99361 109 3e-19 seq65608 109 3e-19 seq52886 109 3e-19 seq220865 107 1e-18 seq78983 107 1e-18 seq8850 107 1e-18 seq89490 105 3e-18 seq21342 105 3e-18 seq125324 100 1e-16 seq70856 91.5 8e-14 seq71312 89.7 3e-13 >seq99360 Length=1508 Score = 111 bits (122), Expect = 8e-20 Identities = 79/91 (87%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 11443 TAAAAAATC---AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| | ||| ||||||||| | | |||||||| |||||||||||||||||||| Sbjct 1401 TAAAAAAGCCCAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 1460 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| ||||||||||||||| ||||| Sbjct 1461 CGACGCTCTAACCAACTGAGCTAATAGGCCG 1491 >seq13001 Length=3565 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||||||| || |||||||| | | |||||||| |||||||||||||||||||| Sbjct 261 AAAAAAAAATCATTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 320 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 321 CGACGCTCTAACCAACTGAGCTAATAGGCC 350 >seq99361 Length=773 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 406 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 465 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 466 CAACTGAGCTAATAGGCCG 484 >seq65608 Length=9672 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||| ||| ||||| |||||||| | | |||||||| |||||||||||||||||||||| Sbjct 5589 AAACAATAAAATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 5648 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 5649 ACGCTCTAACCAACTGAGCTAATAGGCC 5676 >seq52886 Length=4978 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 2626 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 2567 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 2566 AACTGAGCTAATAGGCC 2550 >seq220865 Length=1315 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11446 AAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||| ||| | ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 198 AAAAACAACACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 257 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 258 CTCTAACCAACTGAGCTAATAGGCC 282 >seq78983 Length=3531 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 1284 AAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 1343 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1344 CAACTGAGCTAATAGGCC 1361 >seq8850 Length=6098 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2052 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1993 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 1992 TGAGCTAATAGGCCGT 1977 >seq89490 Length=5364 Score = 105 bits (116), Expect = 3e-18 Identities = 75/86 (87%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 831 AAAAAGTCA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 887 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 888 GCTCTAACCAACTGAGCTAATAGGCC 913 >seq21342 Length=1246 Score = 105 bits (116), Expect = 3e-18 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 660 AAAAATTGATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 601 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| |||| |||||||||| ||||| Sbjct 600 GCTCTAACCAGCTGAGCTAATAGGCCG 574 >seq125324 Length=8046 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 6843 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 6784 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 6783 TGAGCTAATAGGCC 6770 >seq70856 Length=1456 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 1451 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 1393 >seq71312 Length=205 Score = 89.7 bits (98), Expect = 3e-13 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 11477 CTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 205 CTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 153 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260731156869088