Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq41117 154 2e-33 seq99694 143 4e-30 seq99844 138 2e-28 seq99695 134 2e-27 seq69410 104 4e-18 >seq41117 Length=5794 Score = 154 bits (170), Expect = 2e-33 Identities = 178/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| |||||||| || ||||| | ||||| |||||| Sbjct 4904 GATAACATTCAGGGGATCACAAAGCCGGCTATCCGGCGGCTGGCGAGGCGTGGCGGAGTC 4963 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || | || || |||| ||| | ||||| |||||||| | || Sbjct 4964 AAGCGTATCAGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTAAAGATCTTTTTGGAG 5023 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | || || ||||||||| ||||||||||||||| || Sbjct 5024 AACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGACTGTCACCGCC 5083 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| ||||| | || ||| | | |||| ||||| || ||||| Sbjct 5084 ATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACCCTTTACGGTTTCGGTGGTTAA 5143 >seq99694 Length=1722 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| |||||||| || |||||||| ||||| || ||| Sbjct 1396 GCAAAGCGTCACCGTAAGGTTCTTCGCGATAACATTCAGGGAATCACAAAGCCCGCAATC 1455 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||||||||| ||||| || |||||| || ||| ||| |||| || |||| Sbjct 1456 CGGCGTCTGGCTCGTCGGGGTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACA 1515 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||||||| | ||| ||| |||| || || | || || ||| Sbjct 1516 CGTGGCGTTCTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGAG 1575 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| | |||||||| || | ||||| |||| || || | || | || ||| Sbjct 1576 CACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCAAGAGGCAGGGC 1635 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| ||||| ||||| Sbjct 1636 AGGACTCTCTATGGGTTTGGTGGTTAA 1662 >seq99844 Length=9067 Score = 138 bits (152), Expect = 2e-28 Identities = 192/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||||| |||||||| || || ||||| ||||| || || Sbjct 7414 CGCCAAGCGTCACCGTAAGGTGCTTCGCGATAACATTCAGGGTATCACAAAGCCGGCAAT 7355 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||| | ||||||||||||||| || || ||| |||| || |||| Sbjct 7354 CCGGCGTTTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGAC 7295 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||| ||| | ||| ||| |||| || || | ||| || || Sbjct 7294 ACGTGGCGTCCTGAAGATATTCTTGGAGAACGTCATCCGCGACGCCGTGACCTACACTGA 7235 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | ||||| || ||| | ||||| |||| || || | || | || || Sbjct 7234 GCACGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG 7175 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||||| ||||| |||||| Sbjct 7174 CAGGACTCTTTATGGATTTGGGGGTTAAT 7146 >seq99695 Length=2836 Score = 134 bits (148), Expect = 2e-27 Identities = 190/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| |||||||| || |||||||| ||||| || ||| Sbjct 988 GCAAAGCGTCACCGTAAGGTTCTTCGCGATAACATTCAGGGAATCACAAAGCCCGCAATC 1047 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||||||| | ||||| || |||||| || ||| ||| |||| || |||| Sbjct 1048 CGGCGTCTGGCTCGTAGGGGTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACA 1107 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| | |||||||| | ||| ||| |||| || || | ||||| ||| Sbjct 1108 CGTGGCGTTCTCAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTATACTGAG 1167 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| | |||||||| || | ||||| |||| || || | || | || ||| Sbjct 1168 CACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCAAGAGGCAGGGC 1227 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || || ||||| ||||| Sbjct 1228 AGGACTCTCTACGGGTTTGGTGGTTAA 1254 >seq69410 Length=688 Score = 104 bits (114), Expect = 4e-18 Identities = 186/269 (69%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || |||||||| || || ||||||||||| ||||| Sbjct 317 GCCAAGAGGCATCGCA-AGGTGTTGCGTGATAACATTCAGGGCATCACCAAGCCGGCTAT 375 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| | | || || |||||| | || || | |||| || |||| Sbjct 376 TCGCCGTTTGGCCAGAAGAGGAGGCGTCAAGAGAATCAGCGGTCTCATCTACGAGGAGAC 435 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||| | ||| ||| || | |||||| | ||| || || Sbjct 436 ACGCGGCGTCCTCAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGA 495 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || ||| |||||||| |||| ||||| | || | || || Sbjct 496 GCACGCTCGCCGCAAGACGGTGACCGCCATGGATGTCGTTTATGCTCTCAAGAGGCAGGG 555 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | | ||||| ||||| ||| || Sbjct 556 CAGGACTCTCTATGGGTTTGGTGGTTGAT 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78857148752184