Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq195423 627 1e-174 seq9524 118 1e-21 seq170570 100 4e-16 seq93305 100 4e-16 >seq195423 Length=63734 Score = 627 bits (694), Expect = 1e-174 Identities = 716/957 (75%), Gaps = 6/957 (1%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 ||||| | ||| | || ||||| || |||||||| || | ||||||||||| || Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGC-TTTATTGTTGCTTTCATCGCTGCACC 135492 ||||| |||||| | | | || || |||| |||||| | || ||||| ||||| || Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 ||| || ||||||||||| || || ||||||||| |||| |||||| | || ||||| || Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTA--GCAACGCCATCGGCCTTCACTTCTATCCC 135610 || || |||||||| |||| ||| || ||| || || || | || || || || Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCA--GCTATAGGTTTGCATTTTTACCCG 1381 Query 135611 ATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTG 135670 || |||||||| || || ||||||| ||| |||| ||||| ||||||||| | ||| | Sbjct 1380 ATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATT 1321 Query 135671 GTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTAC 135730 || | |||||| | | ||||| | |||||||||||| ||||||||||| || | Sbjct 1320 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 1261 Query 135731 CGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACT 135790 || ||||||||||| ||||||||| ||| || || ||||| |||||||| || || ||| Sbjct 1260 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACT 1201 Query 135791 GCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGC 135850 ||||||||| || ||||||| | || ||||| ||| |||||||||||| || || Sbjct 1200 GCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 1141 Query 135851 ATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCAT 135910 || ||||| ||||| || | |||| |||| |||||||| || |||||||| || ||||| Sbjct 1140 ATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 1081 Query 135911 CCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCAT 135970 || ||||||||||| || || ||||| || ||||| || || || ||| |||||||||| Sbjct 1080 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 1021 Query 135971 GGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTAT 136030 || || | || ||||||||| | | | || || || || ||||| || Sbjct 1020 GGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCA 961 Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 ||||||| ||||||||||| ||||| ||||| || || || |||||||| ||||| || Sbjct 960 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTT 901 Query 136091 GGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTT 136150 || || |||||||||||||||| |||||||| |||||||| |||| || ||||| Sbjct 900 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTG 841 Query 136151 GCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTC 136210 |||||||||||||| || ||||||||||| |||| | || | || ||||| ||| Sbjct 840 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 781 Query 136211 AACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAAC 136270 ||| | ||||| ||||| |||||||| || | || | | ||||||||||| | || Sbjct 780 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 721 Query 136271 ACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 |||||||| ||| | | ||||||||| || |||||||| || ||||| || ||| Sbjct 720 ACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 664 Score = 590 bits (654), Expect = 8e-164 Identities = 740/1009 (73%), Gaps = 12/1009 (1%) Strand=Plus/Plus Query 137875 TGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGACTACTACTTT 137934 ||||||||||| | | || || || || ||||| ||||||||||| ||| | || | Sbjct 35962 TGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCT 36021 Query 137935 TTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTTGTTACAAGCT 137994 |||| ||| ||||| || | || || ||| | || |||||||| ||||| || | Sbjct 36022 TTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCAT 36081 Query 137995 GGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTTCCTCACAGCAGCTG 138054 |||| ||||| || || || | ||| | |||||| || ||| | || || || | Sbjct 36082 GGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCTTAACCGCCGCAG 36141 Query 138055 TTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 138114 |||||||||||||| || | | | |||||| | | |||| ||||||||||| | | Sbjct 36142 TTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCAC 36201 Query 138115 AAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACG 138174 |||||||| | ||||||| ||| | || || || ||||||||||| || || |||| Sbjct 36202 AAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACG 36261 Query 138175 GGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCTCTCG-TCTGGTAGGC 138233 | || || | || || || |||||| | || || ||||| | |||| |||| | | Sbjct 36262 GTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTT---C 36318 Query 138234 A--TCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGTTCGTCAGCGTGT 138291 | | || || || || ||||| |||||||||| ||| || ||||| || || || | Sbjct 36319 AATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTAT 36378 Query 138292 TCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCTTTGGTGTGGCAG 138351 ||||||| ||||| | ||||| || ||||||||||||| || |||||||| || | Sbjct 36379 TCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGG 36438 Query 138352 CAATCTTCCGAT---TCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCCTCAACCCCT 138408 | || || |||| |||| || |||| ||||||| ||||| ||||| | ||||||| Sbjct 36439 CGATATTTCGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCCT 36495 Query 138409 TTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTATTCATGGTG 138468 ||||||||||||| || || ||| | | || | ||||||||| ||||| |||||||| | Sbjct 36496 TTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCG 36555 Query 138469 CTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTAAAGCATTTG 138528 |||| |||||||||||||| | ||||||||| || |||| || || || ||| Sbjct 36556 CTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTA 36615 Query 138529 AACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAA 138588 | || || |||| |||||||||||||| ||||| || |||||||| | ||||| |||| Sbjct 36616 ACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAA 36675 Query 138589 TCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCCG 138648 ||||||| |||||||| ||||| |||||| | || ||||||||| | ||||| || | Sbjct 36676 TCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAG 36735 Query 138649 TCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACCTACGAGCGT 138708 | | ||| | |||| ||| | |||| | | || || || || |||||||| || | Sbjct 36736 TAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTT 36795 Query 138709 ATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGACCTTCTACA 138768 |||| ||||| || || ||||| |||||||| |||||||||||||| ||||| ||||||| Sbjct 36796 ATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACA 36855 Query 138769 CCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGGATCAACCTC 138828 | || || |||||| | || || ||| | ||||| |||||||| || ||||| |||| Sbjct 36856 CAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTC 36915 Query 138829 ACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 | |||||| || | || ||||| || || | || | || |||||||| Sbjct 36916 ATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964 >seq9524 Length=8324 Score = 118 bits (130), Expect = 1e-21 Identities = 215/311 (69%), Gaps = 14/311 (5%) Strand=Plus/Minus Query 135860 ACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCAC 135919 ||||| |||| |||| |||| |||||||| || |||| |||||| ||||| | |||||| Sbjct 895 ACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCCAC 836 Query 135920 ATGTTGGGAGTTGCTGGGGTCTTCGGTGG-----TTCTCTGTTCTCTGCTATGCATGGAT 135974 ||||| || || || ||| | ||| || | |||| ||||||| || | Sbjct 835 ATGTTATGA----CTAAGG-CTTAGCTGGTGCGTTTGGCGGTTC---CCTATGCACGGTT 784 Query 135975 CTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTT 136034 | || ||||||||| | | || || || || || ||||| | || | | | Sbjct 783 ACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAAAGAT 724 Query 136035 ACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTC 136094 ||| || |||| ||| || || |||||| | ||||| ||||||||| ||| || || Sbjct 723 ACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTTGGCT 664 Query 136095 GTCTGAT-CTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCT 136153 |||| ||||| |||||| ||| ||| |||| ||| |||| || ||||| | | Sbjct 663 TATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCCTAGAT 604 Query 136154 GCTTGGCCTGT 136164 ||||||||||| Sbjct 603 GCTTGGCCTGT 593 >seq170570 Length=388 Score = 100 bits (110), Expect = 4e-16 Identities = 132/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 138321 TGGTTCTTTGCTCCCTCCTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAG 138380 || ||||||| || |||||||| | | || || || ||| | || || | || Sbjct 260 TGATTCTTTGAGCCTCGTTTTGGTGTAGTGACGATATTTCGGTTCATCTTTTTTTTCCAA 201 Query 138381 GGTTTCCATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGT 138440 || | |||| |||| | ||||||||||||||||||| || | ||| | || || Sbjct 200 GGGTCTTATAATTGGATATTAAACCCCTTTCATATGATGGA-GTTTCTGGTGTATTTCGT 142 Query 138441 GGTGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGC 138500 | || | | || ||||||||||||||||||| |||||||||||||| | ||||||||| Sbjct 141 GCTGTTTTACTATGTGCTATTCATGGTGCTATTGTAGAAAATACTTTATTTGAAGATGGT 82 Query 138501 GA 138502 || Sbjct 81 GA 80 >seq93305 Length=279 Score = 100 bits (110), Expect = 4e-16 Identities = 92/115 (80%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 138388 ATAACTGGACCCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTC 138447 |||| ||||| | |||||||||||||||||||| || || || | | || | ||||| Sbjct 187 ATAAGTGGACTTTGAACCCCTTTCATATGATGGGAGTTGCCTGTGTATTGGGCGCTGCTC 128 Query 138448 TGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGA 138502 |||| |||||| ||||||| ||||| ||||||||| ||| | ||||||||| || Sbjct 127 TGCTATGTGCT-TTCATGGCGCTACTATAGAAAATATTTTATTTGAAGATGGTGA 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626095964595200