Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq195423 590 2e-164 >seq195423 Length=63734 Score = 590 bits (654), Expect = 2e-164 Identities = 728/987 (74%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||||||||| | ||||||||||| || | Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| || ||||| ||||||| || || || || Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCT 1498 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| || || || ||||| || ||||| || || || | || ||||||||| Sbjct 1497 CCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1438 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||||||| || | |||| | || || ||||| |||| ||||| ||||| Sbjct 1437 ATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 1378 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||| ||||||||||| |||||||| ||| | || |||| Sbjct 1377 TGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| ||| | |||||||||| || | | Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | ||||||| ||| Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199 Query 19709 TGTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | | |||||| | || ||||| |||||| ||||||||||||||| || | Sbjct 1198 TGT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1140 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||| || || ||| | |||||||| || || ||||| ||||||||||| | Sbjct 1139 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1080 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | ||||||||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 1079 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1020 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | ||||| || || | |||| |||||| || || ||| ||| || | Sbjct 1019 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 960 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | ||||| ||||| ||||| || |||||||| || ||||| ||||| || |||| Sbjct 959 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 900 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| |||||| ||||||||||||||||||||||| || | Sbjct 899 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 840 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | || | | || || ||||||||||||||| Sbjct 839 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 780 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 || | |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 779 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAAT 721 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | ||| | |||||||| || | ||||||||||| || || ||| Sbjct 720 ACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 661 Query 20247 GCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||||||||| || || ||||| Sbjct 660 GCTCATAACTTCCCTCTAGACCTAGCT 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144032534888928