Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq89547 172 7e-38 seq235167 122 1e-22 seq589 87.8 2e-12 seq80422 86.0 8e-12 >seq89547 Length=5293 Score = 172 bits (190), Expect = 7e-38 Identities = 411/615 (67%), Gaps = 10/615 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || |||||||||||||| |||||||| |||| || | || || || | Sbjct 2834 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGA 2893 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCA 33414 |||| | ||| ||||||| || |||||||| ||||||||||| | || || | || Sbjct 2894 ACGTCAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 2952 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 33471 || ||||| || || || || |||||| || || | |||||| || || | | | Sbjct 2953 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAG 3012 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | ||| ||||| ||| ||||| ||| |||||| || || || | ||| || Sbjct 3013 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 3069 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 ||||| | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 3070 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 3129 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 |||||||| || || ||||| || ||||| ||||| || |||||||| | ||| Sbjct 3130 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCC 3189 Query 33652 TCGGTAATCTGTACTTCTGTACAAAATCGTTCC-GCCAAATTTTCATTCACTATTCCGTC 33710 |||| | ||| || || || || | | |||| || | || || || || ||||| Sbjct 3190 TCGGCGACCTGGACCTCCGT-CATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTC 3248 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 ||||||||| || || | || || | | || | || ||||| | ||||| Sbjct 3249 GGAGGCTGCAAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGC 3308 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 3309 CTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTC 3368 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATT 33890 || || || ||||| | ||| || | ||| || || ||||| || ||||| || Sbjct 3369 GGCTTTCTTGTACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATCGATC 3428 Query 33891 TGGATTTGGTGCAAG 33905 |||||||| || || Sbjct 3429 GGGATTTGGGGCTAG 3443 >seq235167 Length=544 Score = 122 bits (134), Expect = 1e-22 Identities = 257/378 (68%), Gaps = 8/378 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||||||||| || || || |||| ||||| ||||| || | Sbjct 98 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 157 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || || || ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 158 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCG 217 Query 33416 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 33471 | ||||| || ||||| || ||| ||||| || || |||||||| | || | | | | Sbjct 218 AGAAGAATATCCCTTCCAC-GCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 276 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | ||| ||||| ||| | |||||||||||||| || || || |||| |||||| Sbjct 277 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 333 Query 33532 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33591 | ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 334 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 393 Query 33592 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33651 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 394 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 453 Query 33652 TCGGTAATCTGTACTTCT 33669 |||| | || |||||| Sbjct 454 TCGGAGACTTGGACTTCT 471 >seq589 Length=4664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/239 (69%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||| || |||||||| ||||| || || || |||| ||||| | ||| || | Sbjct 4352 ACAACAAGCACGCGAAATCACAGTGGAGTCCTTCATCTCGCGAGATTAGCTTGTTCGAGA 4411 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGC-GAATGATCCA 33414 | || || || | ||||| || |||||||| | | ||||||| | || ||| || Sbjct 4412 AGGTTAGGCCCGACATTAACCCGCGCTTTTTCAACTAAAATATC-ACGCAGAAACTGCCT 4470 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 33471 || ||||| || ||||| || |||||| || || |||||||| | || | | | | Sbjct 4471 GAGAAGAATATCCCTTCCACGCAAGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 4530 Query 33472 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 | ||| ||||| ||| | |||||||||||||| || || || ||| |||||| Sbjct 4531 C---CATCGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACCGCACCGTTTC 4586 >seq80422 Length=4294 Score = 86.0 bits (94), Expect = 8e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 63611 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63670 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 1444 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1385 Query 63671 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63729 ||| | | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 1384 GTATATTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1326 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 1325 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 1266 Query 63790 AAGTTTTAAAACCAAAATA 63808 ||||| || ||||| || Sbjct 1265 GGGTTTTGAAGCCAAAGTA 1247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621090132102080