Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq89547 93.3 1e-13 seq589 86.0 2e-11 >seq89547 Length=5293 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22498 ATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGG 22557 || || |||||| || || || |||||||| || || ||||| || || |||||| Sbjct 2987 ATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTGG 2928 Query 22558 CTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGAT 22617 || ||||| || | | |||||||| | ||||| ||||||||||| || |||||| Sbjct 2927 CTCAAAAAGCGCGGGTTAATGCCGGGATTGACGTTCTCAAATGAGTTGATCTCGCGAGAT 2868 Query 22618 GAGGGTCTTCATACCGATTTTGCGTG 22643 |||||||| || |||||| ||||| Sbjct 2867 GAGGGTCTCCACTGCGATTTCGCGTG 2842 >seq589 Length=4664 Score = 86.0 bits (94), Expect = 2e-11 Identities = 136/187 (73%), Gaps = 11/187 (6%) Strand=Plus/Minus Query 22858 AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTTCGAAAAA 22917 ||||||||||| |||||||| | ||||| || |||| ||||| |||||||| || || Sbjct 4148 AATCCATTTGATTGGATGGAGTTGATTTCGCTGCAAGGGAAGACGAATTTCTTTGAGAAG 4089 Query 22918 AGAGTTGGTGAATACCAAAAAGCAGGTGTTATG--GATGCATTGAATG---ATAGTTCAA 22972 ||||| || ||||||||||| || ||| ||| || || || |||| || || | Sbjct 4088 AGAGTCGGGGAATACCAAAAGGCTTCTGTGATGTCGA-GCCTT-AATGGAAATGGTGGGA 4031 Query 22973 AACACGGATTTACATTAGATGAAGAATTTTAATTATTTGTAT-TTTATAA-CTAtttttt 23030 | |||| || | | | |||||||| ||||| | |||| | |||||| || ||||| Sbjct 4030 ACCACGTGTTCAAAATGGATGAAGATTTTTA--GACTTGTGTGGTTATAATTTAATTTTT 3973 Query 23031 tttATAA 23037 | |||| Sbjct 3972 GTAATAA 3966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1299371036897616