Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq68514 113 4e-20
seq72069 96.9 3e-15
seq71848 91.5 1e-13
seq68153 86.0 5e-12
seq43799 84.2 2e-11
seq208088 82.4 7e-11
>seq68514
Length=8688
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| | || || || |||||||| |||| |||||| | |
Sbjct 593 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 652
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||| ||||| | || || ||||| ||||| || || || |||||||| ||
Sbjct 653 GACACGATCGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAG 712
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| ||||| | || ||| |||||||||||||| | | | | | | |||||| |||
Sbjct 713 CAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCCGGACCTTGGCCGATTACAAC 772
Query 24171 ATTCAAAAAGAATCTAC 24187
|| ||||||||||| ||
Sbjct 773 ATCCAAAAAGAATCCAC 789
Score = 105 bits (116), Expect = 6e-18
Identities = 144/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| ||||| | || || ||||| |||| || ||| |||| || ||||||| |||
Sbjct 361 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 420
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
| ||||||||||| | ||||| ||||| ||||| || || || ||||| ||
Sbjct 421 CTCTGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCGGA 480
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166
||| ||| | ||||| | || ||| |||||||||||||||| | | | | | ||||||
Sbjct 481 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA 540
Query 24167 TAACATTCAAAAAGAATCTAC 24187
||||| || || || || ||
Sbjct 541 CAACATCCAGAAGGAGTCAAC 561
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047
|| ||||| | ||||| ||||| | || || || | || ||| ||||||| ||| |
Sbjct 7986 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 8045
Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107
|||||| ||||| | ||||| ||||| ||||| || || || || || ||
Sbjct 8046 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 8105
Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167
|| ||| | || || | | ||| |||||||||||||| | | | | | ||||||
Sbjct 8106 CAGCAGCGTCTCATCTTTGCCGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 8165
Query 24168 AACATTCAAAAAGAATCTAC 24187
||||||||||||||||| ||
Sbjct 8166 AACATTCAAAAAGAATCCAC 8185
>seq72069
Length=2032
Score = 96.9 bits (106), Expect = 3e-15
Identities = 110/144 (76%), Gaps = 3/144 (2%)
Strand=Plus/Plus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
||||| |||||||| ||||| ||||| ||||||||||||| | || || ||| | |||
Sbjct 193 GACAAGGAAGGCATTCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 252
Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202
|||| ||| |||| || ||||||||||||||||| || || || |||| || || |
Sbjct 253 GATGGCAG-AACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCT 311
Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225
|| | || ||||| ||||| ||
Sbjct 312 GAGGCTCAGGGGAGGAACTATGAT 335
>seq71848
Length=4061
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049
|||||| | || || || || || || || || |||| ||| | || || ||| |
Sbjct 3801 AATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATCACCCTGGAGGTGGAGAGCTC 3742
Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109
|||||| ||||| | || || ||||| |||||||| || || ||||| || ||
Sbjct 3741 CGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCA 3682
Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169
||||| || || | || ||||||||| ||||| |||| | | | || |||||| ||
Sbjct 3681 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAA 3622
Query 24170 CATTCAAAAAGAATCTAC 24187
||||||||| || || ||
Sbjct 3621 CATTCAAAAGGAGTCCAC 3604
>seq68153
Length=714
Score = 86.0 bits (94), Expect = 5e-12
Identities = 119/167 (71%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086
||||| ||||||| ||| | |||||||||||| | ||||| ||||| |||
Sbjct 705 ATTACTCTCGAAGTTGAGAGCTCCGACACCATCGACAACGTCAAGGCCAAGATCCAGGAC 646
Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146
|| ||||| || || || || || ||||| ||||| | || ||| ||||||||||| ||
Sbjct 645 AAGGAAGGGATTCCGCCGGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAACTCGAGGAC 586
Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCA 24193
| | | | | | |||||| || || || || ||||| || ||||
Sbjct 585 GGCCGCACCTTGGCCGATTACAATATCCAGAAGGAATCAACTCTTCA 539
>seq43799
Length=2218
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| | ||||||||| | ||||| | || || ||
Sbjct 305 ATGCAGATCTTTGTGAAAACCCTCACTGGAAAAACAATTACTCTTGAGGTTGAAAGTTCT 246
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || ||| ||| ||| ||||| || || || || || |||||
Sbjct 245 GACACCATCGACAATGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 186
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| || |||| | || ||||| || ||||||| || | | || ||||||
Sbjct 185 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 126
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| || |||||||| || |||| || ||
Sbjct 125 ATCCAGAAAGAATCCACTCTTCACTTGGT 97
>seq208088
Length=533
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | |||||||| || | |||||||| | || ||| | || || || | |
Sbjct 347 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATCACCCTTGAGGTGGAAAGCTCC 288
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | |||||| || ||| ||||| ||||| || || || || ||
Sbjct 287 GACACCATTGACAATGTCAAAGCCAAAATTCAGGACAAGGAAGGGATCCCACCAGACCAG 228
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| || || |||| | ||||| ||||| || |||| | | | | | ||| ||||||
Sbjct 227 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 168
Query 24171 ATTCAAAAAGAATCTACA 24188
||||| || || || |||
Sbjct 167 ATTCAGAAGGAGTCCACA 150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428686359845640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |