Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq68470 116 3e-21
seq71848 109 4e-19
seq208088 102 7e-17
seq41899 95.1 1e-14
seq72069 93.3 3e-14
>seq68470
Length=2690
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| ||||| | || || | ||| || || |||||||| ||||||||||| ||||||
Sbjct 433 CCTCCGCGTAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGCC 374
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||| | ||||| || || | ||||||| ||| |||||| ||
Sbjct 373 AAGGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGGA 314
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| ||||| ||| | | ||| || | | | | |||||| | ||| |
Sbjct 313 ATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACT 254
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | || || ||||| |||||||| ||||| || || ||||||||
Sbjct 253 TCGAGAGTAATAGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 207
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || ||||| || || | ||| || || |||||||| || || ||||| || |||
Sbjct 661 CCACCACGGAGCCTGAGAACGAGATGAAGGGTTGACTCCTTCTGGATATTGTAATCAGCC 602
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | |||| |||| ||| ||||| ||| | || |||| ||| |||||| ||
Sbjct 601 AAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 542
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| ||||| ||||| ||| | | ||| || | | | ||||| | |||
Sbjct 541 ATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTATCGATCGTGTCTGAGCTCTCAACC 482
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||| || || ||||| || ||||||||||| ||||||||
Sbjct 481 TCGAGGGTGATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 435
>seq71848
Length=4061
Score = 109 bits (120), Expect = 4e-19
Identities = 149/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || |||||||||||||| |||||||| ||||| | || | | ||||| | ||
Sbjct 3598 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGC 3657
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| || | || |||| ||| |||||| ||| | ||||||||||| || ||
Sbjct 3658 TTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTG 3717
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| |||||| | | | | |||||| | |||| |||| |||||| || || ||||
Sbjct 3718 GC--CTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGG 3775
Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936
||| ||| ||||| || |||||||||
Sbjct 3776 TCAACGTCTTGACGAAGATCTGCATT 3801
>seq208088
Length=533
Score = 102 bits (112), Expect = 7e-17
Identities = 161/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| |||| ||| | || |||| || || ||||||||||| || ||||| ||||||||
Sbjct 121 CCACCTCTTAGACGGAGGACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCA 180
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | ||||||||| ||| ||||||||| || ||||| ||
Sbjct 181 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 240
Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| || || ||||| ||||| ||| || || | | | | |||||| | |||
Sbjct 241 ATCCCTTCCTTGTCCTGAATTTTGGCT--TTGACATTGTCAATGGTGTCGGAGCTTTCCA 298
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||| || ||||| || || || || ||||| ||||||||
Sbjct 299 CCTCAAGGGTGATAGTCTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 347
>seq41899
Length=578
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/204 (71%), Gaps = 1/204 (0%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAA-TTG 16791
|| || |||||||||||||| |||||||| ||||| || | ||||||| || |||
Sbjct 204 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGCGAGTCCAGCCGTCCTCAAAATTG 145
Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTG 16851
|||| || | || |||| ||| ||| || || | ||||| ||||| ||| |
Sbjct 144 CTTGCTGGCGAAGATGAGCCTCTGCTGGCCCGGCGGAATCCCCTCCTTGTCCTGAATCTT 85
Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911
| |||||| | | | | |||||| | |||| ||| ||||||||||| |||||
Sbjct 84 CGTCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCTGAGTGATGGTTTTCCCGGT 25
Query 16912 CAGCGTTTTGACAAAAATCTGCAT 16935
| ||| ||||| || ||||||||
Sbjct 24 CGACGTCTTGACGAAGATCTGCAT 1
>seq72069
Length=2032
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| | |||||||| |||| || ||||| ||||||||||| ||||| || || ||
Sbjct 326 CCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTGCA 267
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| || | || ||||||||||| || ||| |||| || | ||| || ||| |||
Sbjct 266 AGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCCGGAGGA 207
Query 16829 ACGCCCTCTTTGTC 16842
| ||| || |||||
Sbjct 206 ATGCCTTCCTTGTC 193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 403910582359120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |