Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq118331 131 1e-25 seq43778 120 2e-22 seq68514 114 9e-21 seq209264 107 1e-18 seq68470 105 4e-18 seq68153 100 2e-16 seq181327 82.4 5e-11 >seq118331 Length=3954 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 2861 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 2802 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2801 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2767 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 868 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 809 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 808 GCCCGTATTTAGCCTT 793 >seq43778 Length=4696 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||| || || || |||||| || || ||||| |||| Sbjct 3503 TACCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAG 3562 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| | || || | |||||| || ||||| || | | || ||||||| | Sbjct 3563 CTAGAGTACGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAG 3622 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||| || |||||| ||| || ||| ||||| | || || || ||||||| Sbjct 3623 GGATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAA 3682 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || ||||||||||| |||| ||||||||| || |||||||| Sbjct 3683 CCTCCAAAGTTATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 3731 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| ||||||||| |||||| ||||||||||| || | | | | | || || Sbjct 3295 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 3354 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || || || ||||| || || | || || || | |||| |||||| ||||| | Sbjct 3355 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 3414 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || || ||||| | | |||||| ||| ||||||||||| ||||| || || Sbjct 3415 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 3474 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || | || || || || || ||||| Sbjct 3475 CCAGTAAGAGTCTTAACAAAGATTTGCAT 3503 >seq68514 Length=8688 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||| ||||||||||| ||||||||| |||||| ||||| |||||||| | Sbjct 8445 TACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCG 8386 Query 38149 ACAAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | || | || || | || || || ||||| || ||||| || ||||| | Sbjct 8385 -CAAGCGTCCTTCCATCCTCCAGCTGCTTCCCTGCAAAGATCAGGCGCTGCTGATCAGGT 8327 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 |||| ||||| |||||| |||||| ||| | || | | || || || || Sbjct 8326 GGGATCCCTTCCTTGTCCTGGATTTTTGCCTTGATGTTGTCAATGGTGTCAGAGCTCTCG 8267 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| | || || || || ||||||| |||||| ||||| |||||||| Sbjct 8266 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 8217 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 |||||||| ||| || || || || || |||| ||| || |||| || |||||| Sbjct 1023 TGAAGAGTTGACTCTTTCTGGATGTTATAGTCAGCCAACGTGCGGCCGTCTTCCAATTGT 964 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 ||||||||||| || | | ||||||||| | |||| ||||| ||||| || || Sbjct 963 TTTCCGGCAAAGATCAATCTTTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGGATCTTG 904 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 ||| ||||| | | |||||| ||| || || || | || || || || || || Sbjct 903 GCCTTGACATTATCAATCGTATCTGAACTCTCCACCTCGAGAGTGATCGTCTTCCCAGTT 844 Query 38295 AAGGTTTTCACGAATATCTGCATG 38318 | |||||| ||||| ||||||||| Sbjct 843 AGGGTTTTGACGAAGATCTGCATG 820 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || |||||||| | ||| || | || || | ||| |||||||| || Sbjct 556 CTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAA 497 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || || ||||| | |||| || || |||||| || || ||| || || Sbjct 496 GATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 437 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || || || || || ||||| | || || ||||| || || | ||||||||| Sbjct 436 GTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCAC 377 Query 38306 GAATATCTGCATGTT 38320 ||| |||||||| || Sbjct 376 GAAGATCTGCATATT 362 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | || | ||| || ||| |||||||||||| || ||||||| Sbjct 8672 ACCACCACGAAGACGGAGGACAAGATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGC 8613 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| ||| | || || | || || || ||||| || || | || ||||| | || Sbjct 8612 TAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGG 8553 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || ||| ||| || ||| ||||| | | ||||| ||| || || Sbjct 8552 AATCCCTTCCTTATCCTGAATCTTAGCCTTGACATTGTCAATGGTATCAGAACTCTCCAC 8493 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| ||||| || || | || || ||||| |||||||| Sbjct 8492 CTCCAGGGTAATTGTTTTCCCAGTAAGAGTCTTGACGAAAATCTGCAT 8445 >seq209264 Length=535 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 357 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 298 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 297 GCCGTTATTTAGCCTTA 281 >seq68470 Length=2690 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | || | ||| | ||| || ||| |||||| ||||| || ||||||| Sbjct 1346 ACCACCACGAAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGC 1287 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| ||| | || || | || || || ||||| || || | || ||||| | || Sbjct 1286 TAAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGG 1227 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| ||| ||| ||| ||||| | | ||||||| || || || Sbjct 1226 AATCCCTTCCTTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCAC 1167 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | |||||||| || || |||||||| || || ||||||||||| Sbjct 1166 CTCCAGAGTAATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 1119 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| |||| |||| |||| |||||| || |||||| || || || ||||| | Sbjct 1119 TACCACCCCTCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCG 1060 Query 38149 ACAAAACACGTTCG-TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 ||| | | ||| || || | ||||| || || || || | || || ||||| | Sbjct 1059 -CAAGAGTCCTTCCATCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGT 1001 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||||| || || |||||| ||| ||||| | | || ||| || ||| Sbjct 1000 GGAATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCA 941 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || ||||| ||||| || || | ||| || || |||||||||||| Sbjct 940 ACTTCCAAAGTAATTGTTTTCCCAGTAAGGGTCTTAACAAATATCTGCATG 890 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| || || |||||||| | ||| || |||| || | |||||||| || || Sbjct 398 CTCCTTCTGTATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAA 339 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || | || || || | ||| | || || ||||| ||| || ||| || || Sbjct 338 GATAAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 279 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || || || || || ||||| | ||||||||||| || |||| ||||||||| Sbjct 278 GTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCGGTCAGGGTTTTCAC 219 Query 38306 GAATATCTGCATG 38318 ||| ||||||||| Sbjct 218 GAAGATCTGCATG 206 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| || |||||| || ||||||||||||| ||| || |||| || | ||| Sbjct 638 ATGAAGGGTTGACTCCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCTTCCAGTTG 579 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 || || ||||| || || | || || || | ||||| || || ||||| ||| || Sbjct 578 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTT 519 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| || || | || || ||| || ||||| || | || || || || || || Sbjct 518 CGCCTTGACGTTATCGATCGTGTCTGAGCTCTCAACCTCGAGGGTGATCGTCTTCCCGGT 459 Query 38294 CAAGGTTTTCACGAATATCTGCATG 38318 | |||||| || || ||||||||| Sbjct 458 TAGGGTTTTGACAAAGATCTGCATG 434 >seq68153 Length=714 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||||||||||| ||||||||| ||||| ||||| |||||||| | | Sbjct 287 CCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG-C 345 Query 38151 AAAACACGTT-CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | || | || || | || || || || || || | || || || || | || Sbjct 346 AAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGG 405 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| |||||| || || ||| || || | || || || || ||||| Sbjct 406 AATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCAAC 465 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||| | ||| || || || ||||| | |||||| ||||||||||||||| Sbjct 466 TTCGAGTGTGATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCATG 514 >seq181327 Length=281 Score = 82.4 bits (90), Expect = 5e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| ||||||||||||||||| |||| ||||||||| | |||| |||||||| Sbjct 7 GTTCTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTCGCCAGGTAGTATTTAGC 66 Query 20020 CTT 20022 ||| Sbjct 67 CTT 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333973651679528