Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq89547 172 7e-38
seq235167 113 6e-20
seq590 98.7 1e-15
seq80422 91.5 2e-13
seq2110 84.2 3e-11
>seq89547
Length=5293
Score = 172 bits (190), Expect = 7e-38
Identities = 404/606 (67%), Gaps = 8/606 (1%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| || || |||||||||||||| |||||||| |||| || || || || || |
Sbjct 2834 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGA 2893
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771
|||| | ||| ||||||| || |||||||| ||||||||||| | |||||| | ||
Sbjct 2894 ACGTCAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 2952
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 32828
|| |||||||| || || || ||||| || || | |||||| || || | | |
Sbjct 2953 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAG 3012
Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888
| ||| ||||| ||| ||||| ||| |||||| || || || | |||||
Sbjct 3013 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 3069
Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948
|| || | ||||||| ||| ||||| | ||||| | || || || | | ||
Sbjct 3070 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 3129
Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008
|||||||| || || ||||| || ||||| || || || ||||||||| | |||
Sbjct 3130 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCC 3189
Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068
|||| | ||| || || || || | | | || | || || || || |||||
Sbjct 3190 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 3249
Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128
||||||||| || || | || || | | || | || ||||| | |||||
Sbjct 3250 GAGGCTGCAAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 3309
Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188
| ||| | || ||||| || | ||| ||||| || | |||||||| || || ||
Sbjct 3310 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCG 3369
Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 33248
|| || || ||||| | ||| || | |||| ||||| || || || ||||| ||
Sbjct 3370 GCTTTCTTGTACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATCGATCG 3429
Query 33249 GGATTT 33254
||||||
Sbjct 3430 GGATTT 3435
>seq235167
Length=544
Score = 113 bits (124), Expect = 6e-20
Identities = 255/378 (67%), Gaps = 8/378 (2%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| ||| || |||||||||||||| || || || |||| |||| ||||| || |
Sbjct 98 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 157
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771
| || || || ||||||| || |||||||| | ||||||||| | |||| || ||
Sbjct 158 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCC 216
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 32828
|| ||||| || ||||| || ||||| || || |||||||| | || | | | |
Sbjct 217 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 276
Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888
| ||| ||||| ||| | |||||||||||||| || || || |||| || ||
Sbjct 277 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 333
Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948
| || ||| | | | ||||| | | ||| | || || || | | ||
Sbjct 334 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 393
Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008
|||||||| || || ||||| || ||||| ||||| || ||||||||| | |||
Sbjct 394 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 453
Query 33009 TCGGTAATCTGTACTTCT 33026
|||| | || ||||||
Sbjct 454 TCGGAGACTTGGACTTCT 471
>seq590
Length=6039
Score = 98.7 bits (108), Expect = 1e-15
Identities = 384/590 (65%), Gaps = 14/590 (2%)
Strand=Plus/Plus
Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712
||| ||| || ||||||| ||| || || || || |||| |||| ||||| || |
Sbjct 1311 ACAACAAGCACGCGAAATGGCAATGGAGTCCTTCATCTCGCAAGATTAGCTCGTTTGAGA 1370
Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771
| | || || ||||||| | |||||||| | ||| ||||| | |||| | | ||
Sbjct 1371 AGATTAGCCCCGGCATTAACCTGCGCTTTTTTAACCACAATATCG-CGCAGAAACTGCCC 1429
Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 32828
|| || || || ||||| || ||||| || || |||||||| | || | | | |
Sbjct 1430 GAGAAAAATATCCCTTCGACGCAGGCAAACGCTATTAGTCTCTCCGCGAATGTCTCCGAG 1489
Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888
| || || ||||| ||| |||||||| | ||| || || || | || || ||
Sbjct 1490 CCGT--TG-ATCCAATTTCAGGCCCAATCTGGCTT-TTGGAAACGCACGACACCGTTTCA 1545
Query 32889 ATAGCATTAAAGAGATAGtttttttCATTAC--TATCTTTAACATATGTATCAATCAAAA 32946
|| || | ||| | | | ||||| | | | | ||| | || || | | | |
Sbjct 1546 ATGGCGTGAAATAAGCGGCTCTTTTCGTCAAAGTTTTTTTTATGTAAGTTTTTAGAAGGA 1605
Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006
| |||||||| | || ||||| || ||||| ||||| || ||||||||| || |
Sbjct 1606 GCGAGTACATTTCGAAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCTCGCG 1665
Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTT-CTGCTAAATTTTCATTCACTATTCCG 33065
||||| | || |||||| | || | | | |||| | ||||| || |||| |
Sbjct 1666 CCTCGAAGACTTGGACTTCTTT-CATGAACATGGCTGCGAGGTTTTCGAGGACAATTCTG 1724
Query 33066 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33125
|| ||| || || || || | |||| | || || | ||| ||||| | |||||
Sbjct 1725 TCCAAGGCGGCGAAGAAGGCGAGCTCATGCGTGATGAAGTGTTTCTCGTCAGCGGTTAGG 1784
Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185
||||| || ||| || | ||| || || || || | ||||||||||| ||
Sbjct 1785 G-ATTCCCATTGGCGATGTCCTGCGATGGGTCGACCTCCTCTGCCGTCCAAAATGAAGCT 1843
Query 33186 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235
|| || || || ||||| | |||||| || | || || |||||||| ||
Sbjct 1844 TCGGCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 1893
>seq80422
Length=4294
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||||||||| | || | || || | |||| | || | || |||||| | ||| |||
Sbjct 1773 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 1714
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|||||||| || || || || ||||| |||||| | |||||||| || || |||
Sbjct 1713 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 1654
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| ||| || || || || ||| ||| | || || || || || ||||||||
Sbjct 1653 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 1594
Query 63407 CCCTCTATACTATCATCCATCAT 63429
|| || ||||||||||| ||||
Sbjct 1593 CCTTCGATACTATCATCTTTCAT 1571
Score = 86.0 bits (94), Expect = 8e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525
|||||| |||||||| | |||||||| || || || |||||| ||| || | | ||
Sbjct 1444 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1385
Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584
||| | | |||||| || || ||||| | ||| |||||||| | | || | ||| |
Sbjct 1384 GTATATTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1326
Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644
|||| |||||||||||||| || | ||| | | || || | |||||| | || |
Sbjct 1325 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 1266
Query 63645 AAGTTTTAAAACCAAAATA 63663
||||| || ||||| ||
Sbjct 1265 GGGTTTTGAAGCCAAAGTA 1247
>seq2110
Length=919
Score = 84.2 bits (92), Expect = 3e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286
||||| ||||| | || | || || | |||| | || | || |||||| | ||| |||
Sbjct 741 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 682
Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346
|| ||||| ||||| || || ||||| ||||| | |||||||| || || |||
Sbjct 681 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 622
Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406
| ||| || || || || ||| ||| | || || || || |||||||| ||
Sbjct 621 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 562
Query 63407 CCCTCTATACTATCATCCATCATG 63430
|| || ||||||||||| |||||
Sbjct 561 CCTTCAATACTATCATCTTTCATG 538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 631743079644800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |