Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_008296.2
Length=177300
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 601 4e-167
>seq195423
Length=63734
Score = 601 bits (666), Expect = 4e-167
Identities = 716/964 (74%), Gaps = 8/964 (1%)
Strand=Plus/Minus
Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140
||||| ||||| ||||||||||||| ||||||| || ||| | ||| | |||||
Sbjct 1590 AACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1531
Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199
||||| || || |||| ||| | || || ||||| || ||||| || || || |||||
Sbjct 1530 -TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGA 1472
Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--C 166257
|| || | || |||||| | ||||| ||||| || || |||||||| || | || |
Sbjct 1471 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTAC 1412
Query 166258 TCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAA 166317
| || || || || ||| | || || || || || |||||||| ||||| ||||||||
Sbjct 1411 TTCTGCA--GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAA 1354
Query 166318 TGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTAT 166377
||| | || || || ||||||| |||| | || | |||||| | | || | |
Sbjct 1353 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1294
Query 166378 GCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 166437
|||||||||||||| |||||| | || ||| || ||||||||||||||||||
Sbjct 1293 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1234
Query 166438 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 166497
|| ||||| || || |||||||||||||| | || || ||| || |||| || |||||
Sbjct 1233 GTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGT 1174
Query 166498 CAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTT 166557
||||| ||| ||||| | ||||| || || ||| ||| || ||||| | |||| ||
Sbjct 1173 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATT 1114
Query 166558 GTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGT 166617
|| ||||| || |||||||||||||| |||||||| ||||| ||| | || ||||| |||
Sbjct 1113 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGT 1054
Query 166618 GTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-T 166676
|||||||| || || || ||| || ||||| || | || || || | | | | |
Sbjct 1053 GTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGAT 995
Query 166677 CCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGA 166736
| | || ||||| |||| ||| ||| || ||||||| || |||||||| |||||
Sbjct 994 CAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGA 935
Query 166737 GACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTC 166796
|| || || ||||| |||||||| ||||| || || || ||||||||||||| |||
Sbjct 934 AACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 875
Query 166797 CTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 166856
|||||||| ||||| || | || |||||||| || || |||||||| || ||||||||
Sbjct 874 TTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTG 815
Query 166857 GTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 166916
||| |||||| | ||| ||||||| ||||| |||||| | || |||||||| ||||||||
Sbjct 814 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCA 755
Query 166917 GTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGC 166976
|| | | ||| |||| |||||||| | || || ||||| ||| | | || |||||
Sbjct 754 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGC 695
Query 166977 TGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGC 167036
| || ||||||||||| ||||| || ||||||||||| ||||||||||| || || ||
Sbjct 694 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 635
Query 167037 TGCT 167040
||||
Sbjct 634 TGCT 631
Score = 520 bits (576), Expect = 1e-142
Identities = 728/1017 (72%), Gaps = 8/1017 (1%)
Strand=Plus/Plus
Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359
|||||| | ||||||||||| | | ||||| || || ||||| || ||||||||
Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011
Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419
|| | || ||||| ||| ||| | || | || || ||| | || ||||| || |||
Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071
Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 167475
|| || ||||||||||| || || || |||| | ||| ||| ||| | ||
Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCC---AGTTCCTATTTGGAAGGCTGCAACTTC 36128
Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535
| | || || ||||| || ||||||||| | | | | |||||| | | |||| ||
Sbjct 36129 T-TAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATG 36187
Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595
||||||||| | || || ||||| | | ||||| || | || || || ||| ||||
Sbjct 36188 GGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTT 36247
Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655
||| || || ||||| || || | || ||||| || ||| | || |||||||| |
Sbjct 36248 TGTTGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGC 36307
Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715
| | || | || ||||| ||||| || || || |||| ||| |||||||| ||
Sbjct 36308 TCGCTCTGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTT 36367
Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775
||| ||||| || || || ||||| || || ||||| ||||||||||||| || ||
Sbjct 36368 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 36427
Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835
|||||| || ||||||||| ||||| | || || | || || || ||||| ||||| |
Sbjct 36428 TGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATT 36487
Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895
||||| || ||||||||||||||||| ||| | | |||| ||| |||| | ||| ||
Sbjct 36488 GAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCAT 36547
Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955
||||| | ||| ||||| |||||| | | |||||||||||| |||||||| |||
Sbjct 36548 TCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCG 36607
Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015
|| ||| | | || || | || ||||| ||||| |||||||| |||||||| || ||
Sbjct 36608 TGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTG 36667
Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075
||||||||| ||||| ||||||| |||||| |||||||| || ||||||||| | ||
Sbjct 36668 GTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 36727
Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135
|| || || | || | |||| ||| || |||| | |||| || || || || ||
Sbjct 36728 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCT 36787
Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195
|||||||||||||| || || |||||| | | ||||| || ||||| || ||||| ||
Sbjct 36788 ACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 36847
Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255
|||||| || ||||| || || | || || || | ||||| |||||||| | |||
Sbjct 36848 TTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGA 36907
Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312
|| || ||||||||| || ||||||| || || || | || | || ||||||||
Sbjct 36908 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565541024684800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |