Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq195423 601 4e-167 >seq195423 Length=63734 Score = 601 bits (666), Expect = 4e-167 Identities = 716/964 (74%), Gaps = 8/964 (1%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||| ||||| ||||||||||||| ||||||| || ||| | ||| | ||||| Sbjct 1590 AACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1531 Query 166141 ATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 ||||| || || |||| ||| | || || ||||| || ||||| || || || ||||| Sbjct 1530 -TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGA 1472 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCC--C 166257 || || | || |||||| | ||||| ||||| || || |||||||| || | || | Sbjct 1471 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTAC 1412 Query 166258 TCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAA 166317 | || || || || ||| | || || || || || |||||||| ||||| |||||||| Sbjct 1411 TTCTGCA--GCTATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAA 1354 Query 166318 TGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTAT 166377 ||| | || || || ||||||| |||| | || | |||||| | | || | | Sbjct 1353 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 1294 Query 166378 GCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 166437 |||||||||||||| |||||| | || ||| || |||||||||||||||||| Sbjct 1293 TGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 1234 Query 166438 GTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGT 166497 || ||||| || || |||||||||||||| | || || ||| || |||| || ||||| Sbjct 1233 GTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGT 1174 Query 166498 CAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTT 166557 ||||| ||| ||||| | ||||| || || ||| ||| || ||||| | |||| || Sbjct 1173 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATT 1114 Query 166558 GTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGT 166617 || ||||| || |||||||||||||| |||||||| ||||| ||| | || ||||| ||| Sbjct 1113 GTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGT 1054 Query 166618 GTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCG-T 166676 |||||||| || || || ||| || ||||| || | || || || | | | | | Sbjct 1053 GTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC-TAGTTTGAT 995 Query 166677 CCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGA 166736 | | || ||||| |||| ||| ||| || ||||||| || |||||||| ||||| Sbjct 994 CAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGA 935 Query 166737 GACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTC 166796 || || || ||||| |||||||| ||||| || || || ||||||||||||| ||| Sbjct 934 AACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 875 Query 166797 CTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTG 166856 |||||||| ||||| || | || |||||||| || || |||||||| || |||||||| Sbjct 874 TTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTG 815 Query 166857 GTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 166916 ||| |||||| | ||| ||||||| ||||| |||||| | || |||||||| |||||||| Sbjct 814 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCA 755 Query 166917 GTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGC 166976 || | | ||| |||| |||||||| | || || ||||| ||| | | || ||||| Sbjct 754 ATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGC 695 Query 166977 TGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGC 167036 | || ||||||||||| ||||| || ||||||||||| ||||||||||| || || || Sbjct 694 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 635 Query 167037 TGCT 167040 |||| Sbjct 634 TGCT 631 Score = 520 bits (576), Expect = 1e-142 Identities = 728/1017 (72%), Gaps = 8/1017 (1%) Strand=Plus/Plus Query 167300 TTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 167359 |||||| | ||||||||||| | | ||||| || || ||||| || |||||||| Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011 Query 167360 TTACTTCTTTTTCCCACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTT 167419 || | || ||||| ||| ||| | || | || || ||| | || ||||| || ||| Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071 Query 167420 GTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACC--TTG--AGGGTGCTAATTT 167475 || || ||||||||||| || || || |||| | ||| ||| ||| | || Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCC---AGTTCCTATTTGGAAGGCTGCAACTTC 36128 Query 167476 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTG 167535 | | || || ||||| || ||||||||| | | | | |||||| | | |||| || Sbjct 36129 T-TAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATG 36187 Query 167536 GGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTT 167595 ||||||||| | || || ||||| | | ||||| || | || || || ||| |||| Sbjct 36188 GGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTT 36247 Query 167596 TGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGATAAG 167655 ||| || || ||||| || || | || ||||| || ||| | || |||||||| | Sbjct 36248 TGTTGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGC 36307 Query 167656 TAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTT 167715 | | || | || ||||| ||||| || || || |||| ||| |||||||| || Sbjct 36308 TCGCTCTGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTT 36367 Query 167716 TGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTT 167775 ||| ||||| || || || ||||| || || ||||| ||||||||||||| || || Sbjct 36368 TGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTT 36427 Query 167776 TGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCT 167835 |||||| || ||||||||| ||||| | || || | || || || ||||| ||||| | Sbjct 36428 TGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATT 36487 Query 167836 CAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAAT 167895 ||||| || ||||||||||||||||| ||| | | |||| ||| |||| | ||| || Sbjct 36488 GAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCAT 36547 Query 167896 CCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAA 167955 ||||| | ||| ||||| |||||| | | |||||||||||| |||||||| ||| Sbjct 36548 TCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCG 36607 Query 167956 AGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTG 168015 || ||| | | || || | || ||||| ||||| |||||||| |||||||| || || Sbjct 36608 TGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTG 36667 Query 168016 GTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTTTT 168075 ||||||||| ||||| ||||||| |||||| |||||||| || ||||||||| | || Sbjct 36668 GTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATT 36727 Query 168076 CGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCT 168135 || || || | || | |||| ||| || |||| | |||| || || || || || Sbjct 36728 TGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCT 36787 Query 168136 TCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAAC 168195 |||||||||||||| || || |||||| | | ||||| || ||||| || ||||| || Sbjct 36788 ACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGAC 36847 Query 168196 TTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 168255 |||||| || ||||| || || | || || || | ||||| |||||||| | ||| Sbjct 36848 TTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGA 36907 Query 168256 CCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 168312 || || ||||||||| || ||||||| || || || | || | || |||||||| Sbjct 36908 TCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565541024684800