Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq89547 214 2e-50
seq19304 91.5 2e-13
seq99706 89.7 6e-13
seq40108 89.7 6e-13
seq222589 87.8 2e-12
seq73029 86.0 7e-12
seq49019 86.0 7e-12
seq17550 84.2 2e-11
seq34518 82.4 8e-11
seq34517 82.4 8e-11
>seq89547
Length=5293
Score = 214 bits (236), Expect = 2e-50
Identities = 513/769 (67%), Gaps = 13/769 (2%)
Strand=Plus/Plus
Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976
||| |||||||| || ||||| |||||||||||| |||||| || | |||||| || |
Sbjct 2667 CAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCAC 2726
Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035
| ||| || || || || ||| || || ||| |||| || | || || || ||||
Sbjct 2727 CA-ACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCA 2785
Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TGTACATTAAGCAC 93094
| | | || | || | | | || || | |||| |||||| | ||||
Sbjct 2786 CTAACGCCTTCACGCG-CTCCTCGCTTAGCTTCGTCCTCAATAAACTGTACAACAGGCAC 2844
Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154
|| || ||| || | ||| || ||||| || ||||||||||| ||| || || ||
Sbjct 2845 GCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCC 2904
Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214
|| | | || || || |||||||||||||| | |||||| || || || || ||
Sbjct 2905 GGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATC 2964
Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274
|| |||||| ||||| || | | | || |||||| | | || | | ||||
Sbjct 2965 CCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAG---CCGTCGATC 3021
Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334
|| ||||| ||||| |||||| || | || || | || ||||| |||| |||
Sbjct 3022 CAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAG 3081
Query 93335 AG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391
|| || | | ||||| || ||| ||||| || || | | ||| || ||||||
Sbjct 3082 AGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATT 3138
Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451
|| || |||| ||||| || || || ||||| |||||||| | || || | || |
Sbjct 3139 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACC 3198
Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511
|| || || || || | |||| || || ||| || || ||||| ||||||
Sbjct 3199 TGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCA 3258
Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG 93571
|| || || | | ||| | | || || ||||| ||| | | || ||||| | |
Sbjct 3259 AAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGG 3318
Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631
||||||| |||||||| ||||| || | ||||||||||| ||||| ||||| |||
Sbjct 3319 CGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTG 3378
Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680
||||| ||||| || | | |||| ||||| || || ||| ||| ||||
Sbjct 3379 TACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATCGAT 3427
>seq19304
Length=13753
Score = 91.5 bits (100), Expect = 2e-13
Identities = 88/110 (80%), Gaps = 10/110 (9%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 11320 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 11263
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGC 126371
||||||||| || ||||| |||||||| | |||| |||||| ||||
Sbjct 11262 CGTGGGTTCAAATCCCACTTCTGACAAAAT-TTAT---AATTTTCATTGC 11217
>seq99706
Length=3659
Score = 89.7 bits (98), Expect = 6e-13
Identities = 83/103 (81%), Gaps = 7/103 (7%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| ||
Sbjct 1354 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 1297
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363
|||||||||| || ||||| ||||| |||| ||||| || ||
Sbjct 1296 GCGTGGGTTCAAATCCCACTTCTGAC-AATTGTTATTTGATTT 1255
>seq40108
Length=3816
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/102 (80%), Gaps = 5/102 (5%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 3261 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3204
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369
||| || |||||| ||| |||| | |||| ||||||| ||
Sbjct 3203 TTCAAATCCCACAGCTGTCAAAATTTTAT---AATTTTTTTT 3165
>seq222589
Length=562
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/96 (81%), Gaps = 4/96 (4%)
Strand=Plus/Minus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323
||| ||| |||||||||||||||||||||||||||||| | |||||| || | |||
Sbjct 281 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 224
Query 126324 TGGGTTCGAACCCCACACCTGACAAA--TTATTATT 126357
||||||| || |||||| ||| |||| ||||| ||
Sbjct 223 TGGGTTCAAATCCCACAGCTGTCAAAACTTATTTTT 188
>seq73029
Length=1713
Score = 86.0 bits (94), Expect = 7e-12
Identities = 70/84 (83%), Gaps = 2/84 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 406 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 463
Query 126328 TTCGAACCCCACACCTGACAAATT 126351
||| || |||||| ||| ||||||
Sbjct 464 TTCAAATCCCACAGCTGTCAAATT 487
>seq49019
Length=10959
Score = 86.0 bits (94), Expect = 7e-12
Identities = 73/89 (82%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 8029 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 7970
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351
|||||||| || ||||| ||||||||||
Sbjct 7969 GTGGGTTCAAATCCCACTTCTGACAAATT 7941
>seq17550
Length=8170
Score = 84.2 bits (92), Expect = 2e-11
Identities = 71/86 (83%), Gaps = 6/86 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 1262 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 1319
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||| || ||||| ||||||
Sbjct 1320 CGTGGGTTCAAATCCCACTTCTGACA 1345
>seq34518
Length=2574
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 14 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 71
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 72 GCGTGGGTTCAAATCCCACTTCTGACA 98
>seq34517
Length=1729
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 6/87 (7%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 935 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 992
Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 993 GCGTGGGTTCAAATCCCACTTCTGACA 1019
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555200742269120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |