Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq89547 214 2e-50 seq19304 91.5 2e-13 seq99706 89.7 6e-13 seq40108 89.7 6e-13 seq222589 87.8 2e-12 seq73029 86.0 7e-12 seq49019 86.0 7e-12 seq17550 84.2 2e-11 seq34518 82.4 8e-11 seq34517 82.4 8e-11 >seq89547 Length=5293 Score = 214 bits (236), Expect = 2e-50 Identities = 513/769 (67%), Gaps = 13/769 (2%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 ||| |||||||| || ||||| |||||||||||| |||||| || | |||||| || | Sbjct 2667 CAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCAC 2726 Query 92977 AAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCA 93035 | ||| || || || || ||| || || ||| |||| || | || || || |||| Sbjct 2727 CA-ACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCA 2785 Query 93036 AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TGTACATTAAGCAC 93094 | | | || | || | | | || || | |||| |||||| | |||| Sbjct 2786 CTAACGCCTTCACGCG-CTCCTCGCTTAGCTTCGTCCTCAATAAACTGTACAACAGGCAC 2844 Query 93095 GCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCT 93154 || || ||| || | ||| || ||||| || ||||||||||| ||| || || || Sbjct 2845 GCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCC 2904 Query 93155 GGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATA 93214 || | | || || || |||||||||||||| | |||||| || || || || || Sbjct 2905 GGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATC 2964 Query 93215 CCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATC 93274 || |||||| ||||| || | | | || |||||| | | || | | |||| Sbjct 2965 CCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAG---CCGTCGATC 3021 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || ||||| ||||| |||||| || | || || | || ||||| |||| ||| Sbjct 3022 CAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAG 3081 Query 93335 AG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATT 93391 || || | | ||||| || ||| ||||| || || | | ||| || |||||| Sbjct 3082 AGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATT 3138 Query 93392 TCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATC 93451 || || |||| ||||| || || || ||||| |||||||| | || || | || | Sbjct 3139 TCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACC 3198 Query 93452 TGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCa 93511 || || || || || | |||| || || ||| || || ||||| |||||| Sbjct 3199 TGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCA 3258 Query 93512 aaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCG 93571 || || || | | ||| | | || || ||||| ||| | | || ||||| | | Sbjct 3259 AAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGG 3318 Query 93572 GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTG 93631 ||||||| |||||||| ||||| || | ||||||||||| ||||| ||||| ||| Sbjct 3319 CGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTG 3378 Query 93632 TACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGAT 93680 ||||| ||||| || | | |||| ||||| || || ||| ||| |||| Sbjct 3379 TACATTTCCCAAATTTGTGGATACTGAATCGGGAACATGCAAAATCGAT 3427 >seq19304 Length=13753 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/110 (80%), Gaps = 10/110 (9%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 11320 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 11263 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGC 126371 ||||||||| || ||||| |||||||| | |||| |||||| |||| Sbjct 11262 CGTGGGTTCAAATCCCACTTCTGACAAAAT-TTAT---AATTTTCATTGC 11217 >seq99706 Length=3659 Score = 89.7 bits (98), Expect = 6e-13 Identities = 83/103 (81%), Gaps = 7/103 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1354 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 1297 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363 |||||||||| || ||||| ||||| |||| ||||| || || Sbjct 1296 GCGTGGGTTCAAATCCCACTTCTGAC-AATTGTTATTTGATTT 1255 >seq40108 Length=3816 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/102 (80%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3261 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3204 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 ||| || |||||| ||| |||| | |||| ||||||| || Sbjct 3203 TTCAAATCCCACAGCTGTCAAAATTTTAT---AATTTTTTTT 3165 >seq222589 Length=562 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/96 (81%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 281 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 224 Query 126324 TGGGTTCGAACCCCACACCTGACAAA--TTATTATT 126357 ||||||| || |||||| ||| |||| ||||| || Sbjct 223 TGGGTTCAAATCCCACAGCTGTCAAAACTTATTTTT 188 >seq73029 Length=1713 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 406 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 463 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| |||||| Sbjct 464 TTCAAATCCCACAGCTGTCAAATT 487 >seq49019 Length=10959 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 8029 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 7970 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| || ||||| |||||||||| Sbjct 7969 GTGGGTTCAAATCCCACTTCTGACAAATT 7941 >seq17550 Length=8170 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 1262 GTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 1319 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 1320 CGTGGGTTCAAATCCCACTTCTGACA 1345 >seq34518 Length=2574 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 14 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 71 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 72 GCGTGGGTTCAAATCCCACTTCTGACA 98 >seq34517 Length=1729 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 935 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 992 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 993 GCGTGGGTTCAAATCCCACTTCTGACA 1019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555200742269120