Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq43778 95.1 9e-15 >seq43778 Length=4696 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || ||||| ||||||||| | ||| || | Sbjct 3503 ATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACCATTACCTTAGAAGTTGAGAGTTCG 3444 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| || ||| || || || || | || |||| Sbjct 3443 GATACTATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGCATCCCGCCTGACCAG 3384 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || || || |||||| || || | ||||| |||||| Sbjct 3383 CAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGAAGGACCCTCGCCGACTACAAT 3324 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| || |||||||| |||| | || | || ||||| Sbjct 3323 ATTCAGAAGGAGTCCACTCTTCACTTGGTCCTTCGCCTTCGTGGAGG 3277 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || ||||||||| | || |||| | | Sbjct 3959 ATGCAAATCTTTGTAAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTGGAAAGCTCG 3900 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || |||||| ||||| || || | || | |||| Sbjct 3899 GACACCATTGACAATGTCAAAGCCAAAATTCAGGATAAGGAAGGGATCCCACCAGACCAG 3840 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || || |||||||||||||||||||| || ||| | || | || || ||||| Sbjct 3839 CAAAGGCTCATCTTTGCTGGCAAACAACTTGAGGATGGACGCACACTTGCAGACTACAAC 3780 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGT 22049 || ||||||||||| || |||||| ||||| | ||| Sbjct 3779 ATCCAGAAGGAATCAACCCTTCATTTGGTACTTCGT 3744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357083884304752