Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq235167 176 8e-39 seq89547 165 2e-35 seq590 118 2e-21 seq221053 113 8e-20 >seq235167 Length=544 Score = 176 bits (194), Expect = 8e-39 Identities = 354/522 (68%), Gaps = 6/522 (1%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| || || || ||| || ||||| ||| ||||||||||| Sbjct 533 CTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCCGCCAGGTTCATG 474 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 ||||| || || || |||||||| ||||||||||||||| || ||||| |||||| Sbjct 473 AAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATCGAGAAC 414 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602 | ||||| || ||||| | || || | |||||||| | ||| ||| Sbjct 413 ATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAACTCCGACGAAAAG 354 Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662 | | | | || ||| | || ||| |||| ||| | || ||||| || ||||| Sbjct 353 AGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTGCCAAAAAGGCCGATTGGGCC 294 Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722 || || |||||||| | | || | || |||| ||||| ||| |||| ||| || | Sbjct 293 CTAAATTGGATCGA-CGGCTCG--GAGACATTCGCGGAGAGACTGATAGCGTTTGCCTGC 237 Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782 || || || || |||||||||||| ||| | | || || ||| | || || | | Sbjct 236 GTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTGAAAAAGCGCGGG 177 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 | ||||| || || |||||||||||||| || ||| | || || || || || | Sbjct 176 TTAATGCCGGGCCTAACCTTCTCGAACGAGCTAATCTCGCGAGATGAAGGACTCCACTGC 117 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902 || || || || | |||| | ||| || ||| |||| ||||||| || Sbjct 116 GATTTCGCGTG---CTTGTTGTACAGCTTGCTGAGGAACAAATTAAGCGAGGAGCGCGTG 60 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 || || | | |||||| |||||||| |||| ||||||| Sbjct 59 ATGGGGATAGTGAAGGAGGCGGTGGAGATAGAGAGGGAGTTC 18 >seq89547 Length=5293 Score = 165 bits (182), Expect = 2e-35 Identities = 355/523 (68%), Gaps = 7/523 (1%) Strand=Plus/Minus Query 42336 TGGACCGCCGAGGAGATTGACCTGGC-CAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| ||||| |||| || | |||| | | ||| ||||||| | || | | Sbjct 3356 TGGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCA-CTGGGAGGCCCTAACCGC 3298 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 |||| ||| ||| ||| || | || |||||||| || ||||| |||||||| || Sbjct 3297 TGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTTGCAGCCTCCGACGGCATCGT 3238 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT 42514 | |||||||| ||| |||||||||| ||||| ||| | |||||||| ||| Sbjct 3237 CCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTT 3178 Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574 ||||||||||||||| ||||| |||||| | ||||| || ||||| | || || | Sbjct 3177 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 3118 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 || |||||| || ||| ||| ||| | || || | ||||| |||||| | || Sbjct 3117 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 3058 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 |||| || ||||| || |||||| | || |||||||| | | || | || || Sbjct 3057 CTGCGTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGA-CGGCTCG--GAGACTTT 3001 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTC-GGGCGCCTTCG 42753 | ||||| | | || ||| | ||| ||||| || |||||||| ||| | || | Sbjct 3000 TGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 2941 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 | | || || |||||||| || | || ||||| ||| | || ||||| || || Sbjct 2940 -CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTGACGTTCTCAAATGAGT 2882 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 | ||| | || ||||| || || | || || || ||||| Sbjct 2881 TGATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT 2839 >seq590 Length=6039 Score = 118 bits (130), Expect = 2e-21 Identities = 356/539 (66%), Gaps = 13/539 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGC 42343 ||| || ||| ||| |||||| ||||||||||| || | || | || ||||| || Sbjct 1884 ATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCT-TCATTTTGGACGGC 1826 Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 |||||| | |||| | |||||| ||| ||||| || || | | |||| || Sbjct 1825 AGAGGAGGTCGACCCATCGCAGGACATCGCCAA-TGGGAATCCCTAACCGCTGACGAGAA 1767 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| ||| | || |||||||||||||||| ||| | || ||| || || Sbjct 1766 ACACTTCATCACGCATGAGCTCGCCTTCTTCGCCGCCTTGGACAGAATTGTCCTCGAAAA 1707 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 ||| || ||| |||||||||||| || || ||| |||||||| |||||||||||| Sbjct 1706 CCTCGCAGCCATGTTCATGAAAGAAGTCCAAGTCTTCGAGGCGCGAGCCTTCTACGGCTT 1647 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 ||| || ||||| |||||| | |||| || ||||| | || || || || ||||| Sbjct 1646 CCAAATCGCCATCGAGAACATCCACTTCGAAATGTACTCGCTCCTTCTAAAAACTTACAT 1587 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGC----TGTTCAAGGCCATGGAGACGATGCCCTGCA 42639 | | | || || || | || | || | ||||| || ||| || | ||| Sbjct 1586 -AAAAAAAACTTTGA-CGAAAAGAGCCGCTTATTTCACGCCATTGAAACGGTGTCGTGCG 1529 Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699 | || ||| | || ||||| || |||||| | | | || | || |||| | Sbjct 1528 TTTCCAA-AAGCCAGATTGGGCCTGAAATTGGATC-AACGGCTCG--GAGACATTCGCGG 1473 Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759 |||| || |||| ||| || |||||| || || || ||||||||| ||| | | | Sbjct 1472 AGAGACTAATAGCGTTTGCCTGCGTCGAAGGGATATTTTTCTCGGGCAGTTTCTGCGCGA 1413 Query 42760 TCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818 | || ||| | || || || ||||| || || | |||||| ||||| || ||| Sbjct 1412 TATTGTGGTTAAAAAAGCGCAGGTTAATGCCGGGGCTAATCTTCTCAAACGAGCTAATC 1354 >seq221053 Length=525 Score = 113 bits (124), Expect = 8e-20 Identities = 193/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGG-CGCAGTTCTCCAACTGGACCGC 42343 ||| || ||| ||| |||| | ||||||||||| | || || | || ||||| | Sbjct 254 ATCCAGTACCCGGAAATCTAGGAAATGTACAAGAAAGTCGAAGCT-TCATTTTGGACGGT 312 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGT-CTGAGAACGAA 42401 |||||| | ||||| | |||||| | ||| | ||||| || || || || ||| Sbjct 313 AGAGGAGGTCGACCTATCGCAGGACATCTGCCAG-TGGGAATCCCTAAACTCCGA-CGAG 370 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 || ||| ||| || | || ||||||||||||||||| |||| || || || Sbjct 371 AAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGAACGGAATTGTTCTCGAA 430 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521 ||||| || |||||||||| ||||| || || || |||||||| |||||||||| Sbjct 431 AACCTCGCAGCCAGGTTCATAAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGC 490 Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGA 42553 ||||| || ||||| |||||| | ||||| || Sbjct 491 TTCCAAATCGCCATCGAGAACATCCACTCCGA 522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941524030410880