Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq235167 176 8e-39
seq89547 165 2e-35
seq590 118 2e-21
seq221053 113 8e-20
>seq235167
Length=544
Score = 176 bits (194), Expect = 8e-39
Identities = 354/522 (68%), Gaps = 6/522 (1%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||||||||||||||| || || || ||| || ||||| ||| |||||||||||
Sbjct 533 CTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCCTCGAAAACCTCGCCGCCAGGTTCATG 474
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542
||||| || || || |||||||| ||||||||||||||| || ||||| ||||||
Sbjct 473 AAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCTTCCAAATCGCCATCGAGAAC 414
Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGT 42602
| ||||| || ||||| | || || | |||||||| | ||| |||
Sbjct 413 ATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACATAAAAAACTCCGACGAAAAG 354
Query 42603 AACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCG 42662
| | | | || ||| | || ||| |||| ||| | || ||||| || |||||
Sbjct 353 AGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTGCCAAAAAGGCCGATTGGGCC 294
Query 42663 CTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCC 42722
|| || |||||||| | | || | || |||| ||||| ||| |||| ||| || |
Sbjct 293 CTAAATTGGATCGA-CGGCTCG--GAGACATTCGCGGAGAGACTGATAGCGTTTGCCTGC 237
Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTG 42782
|| || || || |||||||||||| ||| | | || || ||| | || || | |
Sbjct 236 GTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATATTTTGGTTGAAAAAGCGCGGG 177
Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842
| ||||| || || |||||||||||||| || ||| | || || || || || |
Sbjct 176 TTAATGCCGGGCCTAACCTTCTCGAACGAGCTAATCTCGCGAGATGAAGGACTCCACTGC 117
Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902
|| || || || | |||| | ||| || ||| |||| ||||||| ||
Sbjct 116 GATTTCGCGTG---CTTGTTGTACAGCTTGCTGAGGAACAAATTAAGCGAGGAGCGCGTG 60
Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944
|| || | | |||||| |||||||| |||| |||||||
Sbjct 59 ATGGGGATAGTGAAGGAGGCGGTGGAGATAGAGAGGGAGTTC 18
>seq89547
Length=5293
Score = 165 bits (182), Expect = 2e-35
Identities = 355/523 (68%), Gaps = 7/523 (1%)
Strand=Plus/Minus
Query 42336 TGGACCGCCGAGGAGATTGACCTGGC-CAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394
|||||||| ||||| |||| || | |||| | | ||| ||||||| | || | |
Sbjct 3356 TGGACCGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCA-CTGGGAGGCCCTAACCGC 3298
Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454
|||| ||| ||| ||| || | || |||||||| || ||||| |||||||| ||
Sbjct 3297 TGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTTGCAGCCTCCGACGGCATCGT 3238
Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT 42514
| |||||||| ||| |||||||||| ||||| ||| | |||||||| |||
Sbjct 3237 CCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCGCGTGCCTT 3178
Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574
||||||||||||||| ||||| |||||| | ||||| || ||||| | || || |
Sbjct 3177 CTACGGCTTCCAGATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 3118
Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634
|| |||||| || ||| ||| ||| | || || | ||||| |||||| | ||
Sbjct 3117 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 3058
Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694
|||| || ||||| || |||||| | || |||||||| | | || | || ||
Sbjct 3057 CTGCGTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGA-CGGCTCG--GAGACTTT 3001
Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTC-GGGCGCCTTCG 42753
| ||||| | | || ||| | ||| ||||| || |||||||| ||| | || |
Sbjct 3000 TGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 2941
Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813
| | || || |||||||| || | || ||||| ||| | || ||||| || ||
Sbjct 2940 -CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTGACGTTCTCAAATGAGT 2882
Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856
| ||| | || ||||| || || | || || || |||||
Sbjct 2881 TGATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT 2839
>seq590
Length=6039
Score = 118 bits (130), Expect = 2e-21
Identities = 356/539 (66%), Gaps = 13/539 (2%)
Strand=Plus/Minus
Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGC 42343
||| || ||| ||| |||||| ||||||||||| || | || | || ||||| ||
Sbjct 1884 ATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCT-TCATTTTGGACGGC 1826
Query 42344 CGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403
|||||| | |||| | |||||| ||| ||||| || || | | |||| ||
Sbjct 1825 AGAGGAGGTCGACCCATCGCAGGACATCGCCAA-TGGGAATCCCTAACCGCTGACGAGAA 1767
Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463
||| ||| | || |||||||||||||||| ||| | || ||| || ||
Sbjct 1766 ACACTTCATCACGCATGAGCTCGCCTTCTTCGCCGCCTTGGACAGAATTGTCCTCGAAAA 1707
Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523
||| || ||| |||||||||||| || || ||| |||||||| ||||||||||||
Sbjct 1706 CCTCGCAGCCATGTTCATGAAAGAAGTCCAAGTCTTCGAGGCGCGAGCCTTCTACGGCTT 1647
Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583
||| || ||||| |||||| | |||| || ||||| | || || || || |||||
Sbjct 1646 CCAAATCGCCATCGAGAACATCCACTTCGAAATGTACTCGCTCCTTCTAAAAACTTACAT 1587
Query 42584 CCTGGATCCCGTCGAGCGTAACGGGC----TGTTCAAGGCCATGGAGACGATGCCCTGCA 42639
| | | || || || | || | || | ||||| || ||| || | |||
Sbjct 1586 -AAAAAAAACTTTGA-CGAAAAGAGCCGCTTATTTCACGCCATTGAAACGGTGTCGTGCG 1529
Query 42640 TCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCG 42699
| || ||| | || ||||| || |||||| | | | || | || |||| |
Sbjct 1528 TTTCCAA-AAGCCAGATTGGGCCTGAAATTGGATC-AACGGCTCG--GAGACATTCGCGG 1473
Query 42700 AGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCA 42759
|||| || |||| ||| || |||||| || || || ||||||||| ||| | | |
Sbjct 1472 AGAGACTAATAGCGTTTGCCTGCGTCGAAGGGATATTTTTCTCGGGCAGTTTCTGCGCGA 1413
Query 42760 TCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATC 42818
| || ||| | || || || ||||| || || | |||||| ||||| || |||
Sbjct 1412 TATTGTGGTTAAAAAAGCGCAGGTTAATGCCGGGGCTAATCTTCTCAAACGAGCTAATC 1354
>seq221053
Length=525
Score = 113 bits (124), Expect = 8e-20
Identities = 193/272 (71%), Gaps = 6/272 (2%)
Strand=Plus/Plus
Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGG-CGCAGTTCTCCAACTGGACCGC 42343
||| || ||| ||| |||| | ||||||||||| | || || | || ||||| |
Sbjct 254 ATCCAGTACCCGGAAATCTAGGAAATGTACAAGAAAGTCGAAGCT-TCATTTTGGACGGT 312
Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGT-CTGAGAACGAA 42401
|||||| | ||||| | |||||| | ||| | ||||| || || || || |||
Sbjct 313 AGAGGAGGTCGACCTATCGCAGGACATCTGCCAG-TGGGAATCCCTAAACTCCGA-CGAG 370
Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461
|| ||| ||| || | || ||||||||||||||||| |||| || || ||
Sbjct 371 AAACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGAACGGAATTGTTCTCGAA 430
Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGC 42521
||||| || |||||||||| ||||| || || || |||||||| ||||||||||
Sbjct 431 AACCTCGCAGCCAGGTTCATAAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGC 490
Query 42522 TTCCAGATAGCCATAGAGAACGTGCACTCTGA 42553
||||| || ||||| |||||| | ||||| ||
Sbjct 491 TTCCAAATCGCCATCGAGAACATCCACTCCGA 522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 941524030410880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |