Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq68514 109 4e-19 seq68153 86.0 5e-12 >seq68514 Length=8688 Score = 109 bits (120), Expect = 4e-19 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| |||| |||||||||||| || ||||||||||||||||||||| | Sbjct 8444 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCG- 8386 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| ||| | | || |||| ||||| || ||||| ||||||||||||||||| | Sbjct 8385 CAAGCGTCCTTCCATCCTCCAGCTGCTTCCCTGCAAAGATCAGGCGCTGCTGATCAGGTG 8326 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCG 34077 | | | || |||||| |||||| ||| ||| | | |||| || | ||| Sbjct 8325 GGATCCCTTCCTTGTCCTGGATTTTTGCCTTGATGTTGTCAATGGTGTCAG-AGCTCTCG 8267 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || || ||||| || || ||||| || ||||| |||||| Sbjct 8266 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCATT 8216 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || || ||||| ||||||||| ||||||||||| ||||| || Sbjct 582 AGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGG 523 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| ||||| || ||||| |||||||||||| || | | ||| Sbjct 522 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCC 463 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 |||||| || || ||| | | | | |||| || | || ||||| || Sbjct 462 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAG-AGCTCTCCACTTCGAGAGT 404 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || ||||| |||||||| |||||||| ||||| ||||| || Sbjct 403 GATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATT 362 >seq68153 Length=714 Score = 86.0 bits (94), Expect = 5e-12 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||| |||| |||||||||||| || |||||||||||||||||||| | | Sbjct 287 CCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG-C 345 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || |||| |||||||| || || |||| |||||||| ||| ||| Sbjct 346 AAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGG 405 Query 34020 CACGCTCTCTTTGTCC 34035 | | || |||||| Sbjct 406 AATCCCTTCCTTGTCC 421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395908309347376