Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq68514 109 4e-19
seq68153 86.0 5e-12
>seq68514
Length=8688
Score = 109 bits (120), Expect = 4e-19
Identities = 166/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || ||||| |||| |||||||||||| || ||||||||||||||||||||| |
Sbjct 8444 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCG- 8386
Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
||| ||| | | || |||| ||||| || ||||| ||||||||||||||||| |
Sbjct 8385 CAAGCGTCCTTCCATCCTCCAGCTGCTTCCCTGCAAAGATCAGGCGCTGCTGATCAGGTG 8326
Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCG 34077
| | | || |||||| |||||| ||| ||| | | |||| || | |||
Sbjct 8325 GGATCCCTTCCTTGTCCTGGATTTTTGCCTTGATGTTGTCAATGGTGTCAG-AGCTCTCG 8267
Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128
||| | || || || ||||| || || ||||| || ||||| ||||||
Sbjct 8266 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCATT 8216
Score = 96.9 bits (106), Expect = 3e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Minus
Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969
|||| ||||| || || ||||| ||||||||| ||||||||||| ||||| ||
Sbjct 582 AGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGG 523
Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029
| || || | |||||| ||||| || ||||| |||||||||||| || | | |||
Sbjct 522 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCC 463
Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088
|||||| || || ||| | | | | |||| || | || ||||| ||
Sbjct 462 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAG-AGCTCTCCACTTCGAGAGT 404
Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130
|| ||||| |||||||| |||||||| ||||| ||||| ||
Sbjct 403 GATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATT 362
>seq68153
Length=714
Score = 86.0 bits (94), Expect = 5e-12
Identities = 102/136 (75%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || ||||| |||| |||||||||||| || |||||||||||||||||||| | |
Sbjct 287 CCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG-C 345
Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| ||| | | || |||| |||||||| || || |||| |||||||| ||| |||
Sbjct 346 AAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGG 405
Query 34020 CACGCTCTCTTTGTCC 34035
| | || ||||||
Sbjct 406 AATCCCTTCCTTGTCC 421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395908309347376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |