Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq89547 134 2e-26 seq235167 89.7 6e-13 seq19092 89.7 6e-13 >seq89547 Length=5293 Score = 134 bits (148), Expect = 2e-26 Identities = 375/568 (66%), Gaps = 13/568 (2%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||||||||| || || ||||| | ||||| ||||| || ||| ||||| | || Sbjct 2856 GTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCCGGCATTAACCC 2915 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| || | ||| || ||||| ||||| || |||||||| || |||||||| || Sbjct 2916 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 2975 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || ||||| | | | ||| ||||| | ||| ||| | ||| || | ||| Sbjct 2976 AGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGA---GCCGTCGATCCAATTTAACGC 3032 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 |||| || || || ||| || || || |||| ||| || | |||||| ||||| Sbjct 3033 CCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTCTT 3092 Query 126298 TTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 126356 ||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 3093 TTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA--T 3149 Query 126357 TTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 126414 ||| ||||| ||| | ||||||| | ||||| ||| | ||| ||||| | Sbjct 3150 GTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTC--C 3207 Query 126415 GGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 126472 | || || | || ||||| | || || || ||||| | ||||| || || Sbjct 3208 GTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCAAAGAAGGCG 3267 Query 126473 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCC 126532 || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 3268 AGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGATCT 3327 Query 126533 TTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCC 126592 | ||| ||||| || ||||| || |||||| | || || ||||| || | |||| Sbjct 3328 TGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCC 3387 Query 126593 CAAAGGTGGGGATACTTCAGGGGGAACA 126620 |||| || ||||||| | ||||||| Sbjct 3388 CAAATTTGTGGATACTGAATCGGGAACA 3415 >seq235167 Length=544 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| || || || || ||||| || || ||||||||| || || ||||| | || Sbjct 120 GTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCC 179 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| |||||||| || ||||| || || ||||||||||| || || ||||| || Sbjct 180 GCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAGAATATCCCTTCCACGCA 239 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAA 126204 || ||||| | || | ||| || || Sbjct 240 GGCAAACGCTATCAGTCTCTCCGCGAA 266 >seq19092 Length=7288 Score = 89.7 bits (98), Expect = 6e-13 Identities = 266/403 (66%), Gaps = 8/403 (2%) Strand=Plus/Minus Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 10896 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 4847 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 4788 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 10954 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 4787 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 4730 Query 10955 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCA 11014 || | || ||||| ||||||||||| | || || || || || ||| || ||| Sbjct 4729 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 4670 Query 11015 A-CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 ||| ||| | |||||||||||| ||||||||||| |||||||| || ||||| | Sbjct 4669 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 4611 Query 11074 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 4610 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 4552 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCAC 11192 | |||||||| || || || || ||||||| |||| ||| || | || ||| Sbjct 4551 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTTTGGAATACGAGCTCCAA 4492 Query 11193 TTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTC 11235 | | | |||||| | |||||||| ||||| | ||| Sbjct 4491 CAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTTC 4449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595572829183040