Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq43799 104 2e-17 seq68514 102 8e-17 seq13742 102 8e-17 seq43778 96.9 3e-15 seq71848 93.3 4e-14 seq68153 84.2 2e-11 >seq43799 Length=2218 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | |||||||||| || ||||||||||| Sbjct 307 CCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 366 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || |||||||| |||| | |||||| | |||||| || || || Sbjct 367 AGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGG 426 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | |||| || | ||||| | || || Sbjct 427 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATCGTGTCAGAGCTTTCAAC 485 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || ||||||||||| ||||| ||||||||||||||| Sbjct 486 CTCCAAAGTTATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCATG 534 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | |||| ||||| || ||||||||||| | || || ||||| Sbjct 553 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 612 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 ||||||||||||| | |||| || | || ||||| || || || ||||| || || || Sbjct 613 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATC-CTG 671 Query 138526 ATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 | |||| | ||| |||| || | |||||| | |||||||| | || | || | Sbjct 672 AATTTTGGCTTTGACATTG-TCAATGGTGTCAGAGCTTTCCACCTCAAGGGTGATAGTCT 730 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || || |||||||| |||||||| Sbjct 731 TTCCAGTGAGGGTCTTTACAAAGATCTGCAT 761 >seq68514 Length=8688 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || |||||||||||||| ||| || ||| || ||| |||||||| || |||| | Sbjct 8182 GATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCA 8123 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 8122 AAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 8063 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||| |||| || | || || || || || ||||| Sbjct 8062 TTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTC 8003 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 8002 ACAAATATCTGCAT 7989 Score = 82.4 bits (90), Expect = 8e-11 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||| | || | ||| | | | ||||||||||||||||| || || ||| Sbjct 8671 CCACCACGAAGACGGAGGACAAGATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCT 8612 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| ||||| || || || || | | |||| || | ||| || || || || Sbjct 8611 -AAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGG 8553 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || ||||| || || ||| | || | || |||| || | ||| || | |||| Sbjct 8552 AATCCCTTCCTTATC-CTGAATCTTAGCCTTGACATTG-TCAATGGTATCAGAACTCTCC 8495 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | ||||| ||||| ||||| || || ||||||||||| Sbjct 8494 ACCTCCAGGGTAATTGTTTTCCCAGTAAGAGTCTTGACGAAAATCTGCAT 8445 >seq13742 Length=406 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| || || || ||| ||||||||| || || |||| Sbjct 173 GACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCG 232 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || ||||| ||||| ||| || || | | Sbjct 233 AAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACA 292 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||| ||||||||||| || | || || || |||| |||||| Sbjct 293 TTGT-CGATCGTGTCGAAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTT 351 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 352 CACAAAGATCTGCAT 366 >seq43778 Length=4696 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||| | || || || | | |||||||||| || ||||||||||| ||| Sbjct 3505 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT 3564 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| || || |||||||| || | | |||| | | ||| || || ||||| Sbjct 3565 -AGAGTACGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGG 3623 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | || |||| || | ||||| | || Sbjct 3624 GATGCCCTCCTTGTC-CTGAATCTTAGCCTTGACATTG-TCGATTGTGTCAGAGCTTTCA 3681 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | |||||||||||||| ||||| |||||||||||||| Sbjct 3682 ACCTCCAAAGTTATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 3731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | |||| ||||| || ||||||||||| | || || ||||| Sbjct 3751 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 3810 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 |||||||| || | | |||| || | || ||||| || || || ||||| || || || Sbjct 3811 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATC-CTG 3869 Query 138526 ATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 | |||| | ||| |||| || | |||||| | |||||||| | || | || | Sbjct 3870 AATTTTGGCTTTGACATTG-TCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCT 3928 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | ||||| || || |||||||| || |||||| Sbjct 3929 TTCCAGTGAGGGTCTTTACAAAGATTTGCATG 3960 >seq71848 Length=4061 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||| ||| | ||| || |||||||| || || |||| Sbjct 3607 GACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCG 3666 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||||||||| || || |||||||| ||| || || | Sbjct 3667 AAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTCACG 3726 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||| | || | ||| || || |||| || || Sbjct 3727 TTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTCTTG 3786 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3787 ACGAAGATCTGCAT 3800 >seq68153 Length=714 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| || | ||||||| |||||| || || || || | Sbjct 92 GACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGCCCGTCCTCAAGCTGCTTCCCAGCG 151 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| || || || || || ||||| ||||| ||| | || | || | Sbjct 152 AAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTC-CTGAATCTTGGCCTTGAC 210 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| || | ||||||||| | || | ||| || || |||| || | Sbjct 211 GTTG-TCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGGTCAATGTCT 269 Query 138599 TTACAAAAATCTGCATG 138615 | ||||||||||||||| Sbjct 270 TGACAAAAATCTGCATG 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494782992159360