Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq43799 104 2e-17
seq68514 102 8e-17
seq13742 102 8e-17
seq43778 96.9 3e-15
seq71848 93.3 4e-14
seq68153 84.2 2e-11
>seq43799
Length=2218
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | |||||||||| || |||||||||||
Sbjct 307 CCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCA 366
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| || || |||||||| |||| | |||||| | |||||| || || ||
Sbjct 367 AGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGG 426
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || ||||| ||| || || | |||| || | ||||| | || ||
Sbjct 427 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCGATCGTGTCAGAGCTTTCAAC 485
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||| | || | || ||||||||||| ||||| |||||||||||||||
Sbjct 486 CTCCAAAGTTATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCATG 534
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465
|| ||||| | | |||| ||||| || ||||||||||| | || || |||||
Sbjct 553 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 612
Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525
||||||||||||| | |||| || | || ||||| || || || ||||| || || ||
Sbjct 613 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATC-CTG 671
Query 138526 ATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583
| |||| | ||| |||| || | |||||| | |||||||| | || | || |
Sbjct 672 AATTTTGGCTTTGACATTG-TCAATGGTGTCAGAGCTTTCCACCTCAAGGGTGATAGTCT 730
Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
| ||||| || || |||||||| ||||||||
Sbjct 731 TTCCAGTGAGGGTCTTTACAAAGATCTGCAT 761
>seq68514
Length=8688
Score = 102 bits (112), Expect = 8e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || |||||||||||||| ||| || ||| || ||| |||||||| || |||| |
Sbjct 8182 GATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCA 8123
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| |||||||| |||||||| || || || || ||||| ||| || || |
Sbjct 8122 AAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 8063
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||||| |||||| |||| || | || || || || || |||||
Sbjct 8062 TTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTC 8003
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 8002 ACAAATATCTGCAT 7989
Score = 82.4 bits (90), Expect = 8e-11
Identities = 160/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446
|| || || | ||| | || | ||| | | | ||||||||||||||||| || || |||
Sbjct 8671 CCACCACGAAGACGGAGGACAAGATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCT 8612
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| |||||| ||||| || || || || | | |||| || | ||| || || || ||
Sbjct 8611 -AAAGTACGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGG 8553
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564
|| ||||| || || ||| | || | || |||| || | ||| || | ||||
Sbjct 8552 AATCCCTTCCTTATC-CTGAATCTTAGCCTTGACATTG-TCAATGGTATCAGAACTCTCC 8495
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| | || | ||||| ||||| ||||| || || |||||||||||
Sbjct 8494 ACCTCCAGGGTAATTGTTTTCCCAGTAAGAGTCTTGACGAAAATCTGCAT 8445
>seq13742
Length=406
Score = 102 bits (112), Expect = 8e-17
Identities = 141/195 (72%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || |||||||| || || || ||| ||||||||| || || ||||
Sbjct 173 GACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCG 232
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| || ||||| |||||||| || || ||||| ||||| ||| || || | |
Sbjct 233 AAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACA 292
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
|||| | | |||||| ||||||||||| || | || || || |||| ||||||
Sbjct 293 TTGT-CGATCGTGTCGAAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTT 351
Query 138600 TACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 352 CACAAAGATCTGCAT 366
>seq43778
Length=4696
Score = 96.9 bits (106), Expect = 3e-15
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446
|| || || | ||| | || || || | | |||||||||| || ||||||||||| |||
Sbjct 3505 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT 3564
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| |||||| || || |||||||| || | | |||| | | ||| || || |||||
Sbjct 3565 -AGAGTACGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGG 3623
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564
|| || || ||||| ||| | || | || |||| || | ||||| | ||
Sbjct 3624 GATGCCCTCCTTGTC-CTGAATCTTAGCCTTGACATTG-TCGATTGTGTCAGAGCTTTCA 3681
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| | || | |||||||||||||| ||||| ||||||||||||||
Sbjct 3682 ACCTCCAAAGTTATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 3731
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465
|| ||||| | | |||| ||||| || ||||||||||| | || || |||||
Sbjct 3751 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 3810
Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525
|||||||| || | | |||| || | || ||||| || || || ||||| || || ||
Sbjct 3811 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATC-CTG 3869
Query 138526 ATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583
| |||| | ||| |||| || | |||||| | |||||||| | || | || |
Sbjct 3870 AATTTTGGCTTTGACATTG-TCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCT 3928
Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
| ||||| || || |||||||| || ||||||
Sbjct 3929 TTCCAGTGAGGGTCTTTACAAAGATTTGCATG 3960
>seq71848
Length=4061
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||||||||||||||| ||| | ||| || |||||||| || || ||||
Sbjct 3607 GACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCG 3666
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| ||||||||||| || || |||||||| ||| || || |
Sbjct 3667 AAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTCACG 3726
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||||| ||||||||| | || | ||| || || |||| || ||
Sbjct 3727 TTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTCTTG 3786
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 3787 ACGAAGATCTGCAT 3800
>seq68153
Length=714
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/197 (71%), Gaps = 4/197 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||| || | ||||||| |||||| || || || || |
Sbjct 92 GACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGCCCGTCCTCAAGCTGCTTCCCAGCG 151
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || | ||| || || || || || ||||| ||||| ||| | || | || |
Sbjct 152 AAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTC-CTGAATCTTGGCCTTGAC 210
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||| || | ||||||||| | || | ||| || || |||| || |
Sbjct 211 GTTG-TCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGGTCAATGTCT 269
Query 138599 TTACAAAAATCTGCATG 138615
| |||||||||||||||
Sbjct 270 TGACAAAAATCTGCATG 286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494782992159360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |