Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq68470 100 2e-16
seq43778 100 2e-16
seq68514 87.8 1e-12
seq43779 84.2 2e-11
>seq68470
Length=2690
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| | ||||||||| || || || || ||||| ||||| ||| | || | || ||
Sbjct 1100 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTC 1041
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| |||||||||||| | ||||||||||| || || ||||||||||||||| ||
Sbjct 1040 AAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTATCTTG 981
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||||| || ||| | || || || || | || || || || ||||| |||||
Sbjct 980 GATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATTGTTTT 921
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || ||||| || |||||
Sbjct 920 CCCAGTAAGGGTCTTAACAAATATCTGCAT 891
>seq43778
Length=4696
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || ||||| || || || || || || ||||| ||| ||| | || | |||||
Sbjct 3295 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 3354
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || || ||||| | || | | ||| ||||| || || ||||||||||| |
Sbjct 3355 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 3414
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| || ||| ||| | || |||||||| | | || || |||||||||||||| ||
Sbjct 3415 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 3474
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||| || ||||| |||||||||
Sbjct 3475 CCAGTAAGAGTCTTAACAAAGATTTGCATA 3504
Score = 98.7 bits (108), Expect = 7e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026
|| || || ||||| || || || || |||||||| || ||| ||| | | | |||||
Sbjct 3523 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT-AGAGTACGGCCATCTTC 3581
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| |||||||||||| | ||||| | ||| || ||| || || || ||||||||
Sbjct 3582 AAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTG 3641
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
||| || || ||| | || || || || |||| || || || || || |||||
Sbjct 3642 AATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTTTT 3701
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||| ||||| ||||| |||||||| ||||||
Sbjct 3702 ACCAGTCAGGGTTTTCACAAAAATCTGCATA 3732
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|| || |||| ||| || || ||||| | || || || || || |||||||||||
Sbjct 2821 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCTGCA 2880
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | ||| | ||||| | || ||||| || | ||||| | ||| ||||| ||||
Sbjct 2881 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGA 2940
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || ||||| || || ||| || ||| | || || || || | | |||||
Sbjct 2941 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACC 3000
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | || || ||||| || || ||||| || ||||||||||||||
Sbjct 3001 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 3047
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| ||||||||||| || || || || |||||||| || || | | | || ||
Sbjct 3751 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 3810
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| |||||||||||| | || | | || ||||| ||| || |||||||| || |
Sbjct 3811 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 3870
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|||||| ||| ||| | || || || || |||| || || | ||||||||| ||
Sbjct 3871 ATTTTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCTTT 3930
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || |||||||| ||||||||
Sbjct 3931 CCAGTGAGGGTCTTTACAAAGATTTGCAT 3959
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || || ||||| || || || || ||||| |||||| ||| | | | | || ||
Sbjct 3978 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGGGTGCGCCCATCCTC 4037
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
| ||||| ||||| | || | | ||| || || |||||| |||||||||||
Sbjct 4038 AAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTG 4097
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|| || ||| ||| | || || ||||| |||| || || | ||| ||||||||
Sbjct 4098 GATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCAACCTCAAGGGTTATGGTTTT 4157
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || ||||| || ||||| ||||||||
Sbjct 4158 TCCGGTGAGAGTCTTCACAAAGATTTGCAT 4187
>seq68514
Length=8688
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| ||||| || || ||||| ||||| ||||| || | | |||| |||| ||
Sbjct 1252 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 1193
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091
|| |||||| | || | | ||| || || |||||| ||||||||||| ||| ||
Sbjct 1192 CTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 1133
Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151
||| || ||| | || || ||||| | | || || || | ||||| || || || |
Sbjct 1132 TGCCTTG-ACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAG 1074
Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176
||| ||| || ||||||||||||||
Sbjct 1073 TCAAAGTCTTGACAAAAATTTGCAT 1049
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| || | || | || | ||| | ||| || |||||||| ||||||||||||
Sbjct 821 TGCCACCACGGAGCCTGAGGACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGG 762
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
| | | ||||||| | ||| || || ||| | |||| | ||| |||||| |
Sbjct 761 CCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAG 702
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| ||||| |||||||| || ||| || || | || || || ||| | || |
Sbjct 701 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGA 642
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | |||||| || || || ||||| ||||| || || || |||||
Sbjct 641 CCTCGAGGGTAATCGTCTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 593
>seq43779
Length=2831
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081
|| || | |||||||||||| | || | | || ||||| ||| ||||||||||||
Sbjct 37 TCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTG 96
Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141
|| ||| ||| ||| ||| | || ||||| ||| |||| || || | ||| ||
Sbjct 97 TCCTGAATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTGATA 156
Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
||||| || || || || |||||||| || ||||||
Sbjct 157 GTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356353214241080
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