Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq68470 100 2e-16 seq43778 100 2e-16 seq68514 87.8 1e-12 seq43779 84.2 2e-11 >seq68470 Length=2690 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| | ||||||||| || || || || ||||| ||||| ||| | || | || || Sbjct 1100 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCATCCTC 1041 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||||||||| | ||||||||||| || || ||||||||||||||| || Sbjct 1040 AAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTATCTTG 981 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| | || || || || | || || || || ||||| ||||| Sbjct 980 GATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATTGTTTT 921 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| || ||||| Sbjct 920 CCCAGTAAGGGTCTTAACAAATATCTGCAT 891 >seq43778 Length=4696 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || || || || ||||| ||| ||| | || | ||||| Sbjct 3295 ACCAAGTGAAGAGTGGACTCCTTCTGAATATTGTAGTCGGCGAGGGTCCTTCCATCTTCA 3354 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | || | | ||| ||||| || || ||||||||||| | Sbjct 3355 AGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCTTCCTTGTCTTGA 3414 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| ||| | || |||||||| | | || || |||||||||||||| || Sbjct 3415 ATCTTAGCTTTAACATTGTCAATAGTATCCGAACTCTCAACTTCTAAGGTAATGGTCTTG 3474 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| || ||||| ||||||||| Sbjct 3475 CCAGTAAGAGTCTTAACAAAGATTTGCATA 3504 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTC 15026 || || || ||||| || || || || |||||||| || ||| ||| | | | ||||| Sbjct 3523 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT-AGAGTACGGCCATCTTC 3581 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | |||||||||||| | ||||| | ||| || ||| || || || |||||||| Sbjct 3582 AAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCCTTGTCCTG 3641 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| || || ||| | || || || || |||| || || || || || ||||| Sbjct 3642 AATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTTATAGTTTT 3701 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| ||||| ||||| |||||||| |||||| Sbjct 3702 ACCAGTCAGGGTTTTCACAAAAATCTGCATA 3732 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || |||| ||| || || ||||| | || || || || || ||||||||||| Sbjct 2821 CCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCTGCA 2880 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | ||| | ||||| | || ||||| || | ||||| | ||| ||||| |||| Sbjct 2881 AGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGA 2940 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || ||||| || || ||| || ||| | || || || || | | ||||| Sbjct 2941 ATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACC 3000 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || || ||||| || || ||||| || |||||||||||||| Sbjct 3001 TCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 3047 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||||||||| || || || || |||||||| || || | | | || || Sbjct 3751 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 3810 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||||||||| | || | | || ||||| ||| || |||||||| || | Sbjct 3811 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 3870 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| ||| ||| | || || || || |||| || || | ||||||||| || Sbjct 3871 ATTTTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCTTT 3930 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || |||||||| |||||||| Sbjct 3931 CCAGTGAGGGTCTTTACAAAGATTTGCAT 3959 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || ||||| || || || || ||||| |||||| ||| | | | | || || Sbjct 3978 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGGGTGCGCCCATCCTC 4037 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||||| ||||| | || | | ||| || || |||||| ||||||||||| Sbjct 4038 AAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTG 4097 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || || ||| ||| | || || ||||| |||| || || | ||| |||||||| Sbjct 4098 GATCTTAGCTTTGACATTATCAATGGTATCAGAGCTTTCAACCTCAAGGGTTATGGTTTT 4157 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || ||||| |||||||| Sbjct 4158 TCCGGTGAGAGTCTTCACAAAGATTTGCAT 4187 >seq68514 Length=8688 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || ||||| ||||| ||||| || | | |||| |||| || Sbjct 1252 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 1193 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 || |||||| | || | | ||| || || |||||| ||||||||||| ||| || Sbjct 1192 CTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 1133 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || ||| | || || ||||| | | || || || | ||||| || || || | Sbjct 1132 TGCCTTG-ACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAG 1074 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 ||| ||| || |||||||||||||| Sbjct 1073 TCAAAGTCTTGACAAAAATTTGCAT 1049 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | || | || | ||| | ||| || |||||||| |||||||||||| Sbjct 821 TGCCACCACGGAGCCTGAGGACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGG 762 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | | | ||||||| | ||| || || ||| | |||| | ||| |||||| | Sbjct 761 CCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAG 702 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || || | || || || ||| | || | Sbjct 701 GGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTCTCGA 642 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | |||||| || || || ||||| ||||| || || || ||||| Sbjct 641 CCTCGAGGGTAATCGTCTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 593 >seq43779 Length=2831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 || || | |||||||||||| | || | | || ||||| ||| |||||||||||| Sbjct 37 TCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTG 96 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || ||| ||| ||| ||| | || ||||| ||| |||| || || | ||| || Sbjct 97 TCCTGAATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCCACCTCAAGGGTGATA 156 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || || || || |||||||| || |||||| Sbjct 157 GTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356353214241080