Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq68514 125 6e-24 seq68470 122 8e-23 seq68153 113 4e-20 seq43778 113 4e-20 seq72069 89.7 5e-13 seq71848 89.7 5e-13 seq13742 87.8 2e-12 >seq68514 Length=8688 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | ||| || || |||||||| ||||| ||||| || |||||| Sbjct 594 ATGCCGCCACGGAGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCG 535 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||| ||||| ||| | |||| || ||||| ||||| Sbjct 534 GCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGA 475 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || || || || |||| || | || | |||||| || ||| Sbjct 474 GGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCTCTC 416 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| | ||||||||||||||| ||||| || || || ||||| Sbjct 415 CACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 365 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || ||||| | || ||||||| || ||||| ||||| || || |||||| Sbjct 8218 ATTCCACCACGAAGCCTGAGGACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCG 8159 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || || || | ||| || || || | || | || |||||||||||| Sbjct 8158 GCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGC 8099 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || || |||| || | || | |||||||| ||| Sbjct 8098 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATTGTGTCGGAGCTCTC 8040 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| || | || |||||||| || ||||| ||||| || |||||| Sbjct 8039 CACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCACAAATATCTGCATC 7988 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || ||||| ||||| | | || || || || ||||| || || ||||| ||||| || Sbjct 1050 ATGCCTCCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAGTCA 991 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 || ||| | || |||||||||||||| || | ||||||| ||| || || || Sbjct 990 GCCAACG-TGCGGCCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGG 932 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 || || ||||| || ||||| || || |||| || | || || ||| ||| Sbjct 931 TGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATCGTATCTGAACTCTC 872 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||| | ||| || || ||||| ||||| || || || ||||| Sbjct 871 CACCTCGAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 821 >seq68470 Length=2690 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | | || ||||| || ||||| ||||| || || || |||||| Sbjct 436 ATGCCTCCGCGTAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCG 377 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | |||||||| ||| | || | | ||||||||||| Sbjct 376 GCCAAGGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGG 317 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || |||||||| || |||| || | || | ||||||||| ||| Sbjct 316 GGAATTCCCTCCTTGTCTTGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTC 258 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||||||| ||||||||||| || ||||| || || || ||||| Sbjct 257 GACTTCGAGAGTAATAGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 207 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || |||||||| | || ||||| || ||||| ||||| |||||||| ||||| Sbjct 664 ATACCACCACGGAGCCTGAGAACGAGATGAAGGGTTGACTCCTTCTGGATATTGTAATCA 605 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||| ||| || || || | |||| | ||||||||||| Sbjct 604 GCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGG 545 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || |||||||| || |||| || | || | ||||| || ||| Sbjct 544 GGGATTCCCTCCTTGTCTTGAATCTTCGCCTTGA-CGTTATCGATCGTGTCTGAGCTCTC 486 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | ||| || |||||||| ||||| ||||| || ||||| Sbjct 485 AACCTCGAGGGTGATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 435 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | ||| | | || || || || ||||| || ||||| || || |||||| Sbjct 892 ATGCCTCCCCTGAGACGAAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAATCG 833 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || ||| | ||||||| ||||||||||||| Sbjct 832 GCCAAGGTGCGGCCATCTTCCAACTGCTTACCGGCGAAGATCAATCTTTGCTGGTCCGGC 773 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || ||||| || || || || |||| || | || | || || ||| ||| Sbjct 772 GGGATCCCCTCTTTGTCCTGGATCTTGGCCTTGA-CGTTATCAATCGTATCCGAACTCTC 714 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||| || || ||||| ||||| || || || ||||| Sbjct 713 CACCTCCAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 663 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||||||||| | | || ||||| || ||||| ||||| ||||| || |||||| Sbjct 208 ATGCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCG 149 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || ||||| || | || | | |||||||||||| Sbjct 148 GCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGC 89 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || ||||| || || || | || | || | |||||| || ||| Sbjct 88 GGAATTCCCTCCTTGTCTTGGATCTTGGCCTTTA-CGTTGTCGATGGTGTCCGAGCTCTC 30 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||||||||||||| ||||||||||| Sbjct 29 GACTTCGAGAGTAATAGTTTTGCCGGT 3 >seq68153 Length=714 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| ||||| || ||||||||||| || || || ||||| | || | ||| Sbjct 301 CAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCCATC 360 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| || || || ||| | ||||| || ||||||||||||||||| ||||| || || Sbjct 361 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTC 420 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || || || |||| || | || | |||||||| ||| |||||||| || | || Sbjct 421 CTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGAGCTCTCAACTTCGAGTGTGATCG 479 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || ||||| ||||| || || || ||||| Sbjct 480 TCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 513 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| || || || ||||||||||| |||||||| |||||| Sbjct 512 ATGCCCCCACGGAGACGAAGCACGAGGTGAAGAGTTGATTCCTTCTGGATATTGTAATCG 571 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||| ||||| ||| | |||| | |||||||||||| Sbjct 572 GCCAAGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGC 631 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || |||| || | || | ||||||||| ||| Sbjct 632 GGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTC 690 Query 45290 GACTTCGAGAGTAACCGTTTTGCC 45313 ||||||||||||| || ||||| Sbjct 691 AACTTCGAGAGTAATGGTCTTGCC 714 >seq43778 Length=4696 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| || || |||||||| | ||||| || |||||||| || || || ||||| Sbjct 2818 ATTCCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCT 2877 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || ||||| | ||||| | |||||||| || Sbjct 2878 GCAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGT 2937 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || |||||||| || || || | || | ||||| ||| ||| Sbjct 2938 GGAATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCT 2997 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| | ||||| || || ||||| || |||||||||||||| Sbjct 2998 ACCTCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 3047 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAG--AATCGTCCAAT 45194 ||| || ||||||||||| ||||| || || | ||| || | | ||| || | | Sbjct 3756 ATGAAGGGTTGATTCCTTCTGGATGTTGTAGT--CTGCAAGTGTGCGTCCATCCTCAAGT 3813 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 ||||| || || | || | | ||||||||| || || || ||||| ||||| |||||| Sbjct 3814 TGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGAATT 3873 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || ||||| || | |||||| || || || || || |||| || || || Sbjct 3874 TTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCTTTCCA 3933 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||| |||||||| Sbjct 3934 GTGAGGGTCTTTACAAAGATTTGCAT 3959 >seq72069 Length=2032 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || | || ||||| || |||||||| || |||||||| Sbjct 328 TTCCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTG 269 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| | ||| ||||||||||| || || | |||| || ||||| ||||| | Sbjct 268 CAAGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCCGGAG 209 Query 45232 GAATGCCTTCTTTATCTTG 45250 |||||||||| || || || Sbjct 208 GAATGCCTTCCTTGTCCTG 190 >seq71848 Length=4061 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | |||||| || || ||||| |||||||| ||||| ||||||||| Sbjct 3799 ATTCCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCG 3858 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||| || || || ||| | || | | ||||||||||| Sbjct 3859 GCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGG 3918 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || || || || || | || | || | |||||||| ||| Sbjct 3919 GGGATCCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTC 3977 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | ||| || ||||| ||||| || || || || ||||| Sbjct 3978 CACCTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 4028 >seq13742 Length=406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || || || || ||||| ||||| || ||||| Sbjct 140 CCGCCGCGGAGACGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCC 199 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || ||||| ||| | |||| || ||||||||||| ||| Sbjct 200 AAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGA 259 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| || || || || || |||| || | |||||| | ||| || Sbjct 260 ATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCGAAGCTCTCCACC 319 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 |||||||| | || |||||||| | |||||| ||||| || |||||| Sbjct 320 TCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCACAAAGATCTGCATC 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450655733260480