Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq68514 125 6e-24
seq68470 122 8e-23
seq68153 113 4e-20
seq43778 113 4e-20
seq72069 89.7 5e-13
seq71848 89.7 5e-13
seq13742 87.8 2e-12
>seq68514
Length=8688
Score = 125 bits (138), Expect = 6e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || |||||||| | ||| || || |||||||| ||||| ||||| || ||||||
Sbjct 594 ATGCCGCCACGGAGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCG 535
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | ||| ||||| ||| | |||| || ||||| |||||
Sbjct 534 GCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGA 475
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || || || || || || || || |||| || | || | |||||| || |||
Sbjct 474 GGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGCTCTC 416
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||||||||| | ||||||||||||||| ||||| || || || |||||
Sbjct 415 CACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 365
Score = 96.9 bits (106), Expect = 3e-15
Identities = 162/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || || ||||| | || ||||||| || ||||| ||||| || || ||||||
Sbjct 8218 ATTCCACCACGAAGCCTGAGGACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCG 8159
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || || || | ||| || || || | || | || ||||||||||||
Sbjct 8158 GCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGC 8099
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || || || || || || |||| || | || | |||||||| |||
Sbjct 8098 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATTGTGTCGGAGCTCTC 8040
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|||||||| || | || |||||||| || ||||| ||||| || ||||||
Sbjct 8039 CACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCACAAATATCTGCATC 7988
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
|| ||||| ||||| | | || || || || ||||| || || ||||| ||||| ||
Sbjct 1050 ATGCCTCCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCTTTCTGGATGTTATAGTCA 991
Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
|| ||| | || |||||||||||||| || | ||||||| ||| || || ||
Sbjct 990 GCCAACG-TGCGGCCGTCTTCCAATTGTTTTCCGGCAAAGATCAATCTTTGTTGATCTGG 932
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289
|| || ||||| || ||||| || || |||| || | || || ||| |||
Sbjct 931 TGGGATCCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCAATCGTATCTGAACTCTC 872
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| |||||||| | ||| || || ||||| ||||| || || || |||||
Sbjct 871 CACCTCGAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 821
>seq68470
Length=2690
Score = 122 bits (134), Expect = 8e-23
Identities = 167/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| |||||||| || | | || ||||| || ||||| ||||| || || || ||||||
Sbjct 436 ATGCCTCCGCGTAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCG 377
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | |||||||| ||| | || | | |||||||||||
Sbjct 376 GCCAAGGTGCGGCCGTCCTCGAGCTGTTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGG 317
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || || |||||||| || |||| || | || | ||||||||| |||
Sbjct 316 GGAATTCCCTCCTTGTCTTGAATCTTCGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTC 258
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||||||||||| ||||||||||| || ||||| || || || |||||
Sbjct 257 GACTTCGAGAGTAATAGTTTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 207
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || |||||||| | || ||||| || ||||| ||||| |||||||| |||||
Sbjct 664 ATACCACCACGGAGCCTGAGAACGAGATGAAGGGTTGACTCCTTCTGGATATTGTAATCA 605
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || |||| ||| || || || | |||| | |||||||||||
Sbjct 604 GCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGG 545
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || || || || |||||||| || |||| || | || | ||||| || |||
Sbjct 544 GGGATTCCCTCCTTGTCTTGAATCTTCGCCTTGA-CGTTATCGATCGTGTCTGAGCTCTC 486
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || | ||| || |||||||| ||||| ||||| || |||||
Sbjct 485 AACCTCGAGGGTGATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 435
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||| | ||| | | || || || || ||||| || ||||| || || ||||||
Sbjct 892 ATGCCTCCCCTGAGACGAAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAATCG 833
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| ||||| || || || ||| | ||||||| |||||||||||||
Sbjct 832 GCCAAGGTGCGGCCATCTTCCAACTGCTTACCGGCGAAGATCAATCTTTGCTGGTCCGGC 773
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || || ||||| || || || || |||| || | || | || || ||| |||
Sbjct 772 GGGATCCCCTCTTTGTCCTGGATCTTGGCCTTGA-CGTTATCAATCGTATCCGAACTCTC 714
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| | ||| || || ||||| ||||| || || || |||||
Sbjct 713 CACCTCCAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 663
Score = 96.9 bits (106), Expect = 3e-15
Identities = 147/207 (71%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||||||||| | | || ||||| || ||||| ||||| ||||| || ||||||
Sbjct 208 ATGCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCG 149
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | || ||||| || | || | | ||||||||||||
Sbjct 148 GCCAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGC 89
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| || || || ||||| || || || | || | || | |||||| || |||
Sbjct 88 GGAATTCCCTCCTTGTCTTGGATCTTGGCCTTTA-CGTTGTCGATGGTGTCCGAGCTCTC 30
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||||||||||||| |||||||||||
Sbjct 29 GACTTCGAGAGTAATAGTTTTGCCGGT 3
>seq68153
Length=714
Score = 113 bits (124), Expect = 4e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187
|||||| ||||| || ||||||||||| || || || ||||| | || | |||
Sbjct 301 CAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCCATC 360
Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247
|||| || || || ||| | ||||| || ||||||||||||||||| ||||| || ||
Sbjct 361 CTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCTTCCTTGTC 420
Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306
|| || || |||| || | || | |||||||| ||| |||||||| || | ||
Sbjct 421 CTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGAGCTCTCAACTTCGAGTGTGATCG 479
Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| || || ||||| ||||| || || || |||||
Sbjct 480 TCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 513
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | ||| || || || ||||||||||| |||||||| ||||||
Sbjct 512 ATGCCCCCACGGAGACGAAGCACGAGGTGAAGAGTTGATTCCTTCTGGATATTGTAATCG 571
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | ||| ||||| ||| | |||| | ||||||||||||
Sbjct 572 GCCAAGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGC 631
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| ||||| || || || || || |||| || | || | ||||||||| |||
Sbjct 632 GGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTC 690
Query 45290 GACTTCGAGAGTAACCGTTTTGCC 45313
||||||||||||| || |||||
Sbjct 691 AACTTCGAGAGTAATGGTCTTGCC 714
>seq43778
Length=4696
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| || || |||||||| | ||||| || |||||||| || || || |||||
Sbjct 2818 ATTCCTCCACGCAGTCTCAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCT 2877
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| | ||| || | || || ||||| | ||||| | |||||||| ||
Sbjct 2878 GCAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGT 2937
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || |||||||| || || || | || | ||||| ||| |||
Sbjct 2938 GGAATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCT 2997
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| | ||||| || || ||||| || ||||||||||||||
Sbjct 2998 ACCTCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 3047
Score = 82.4 bits (90), Expect = 7e-11
Identities = 143/206 (69%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAG--AATCGTCCAAT 45194
||| || ||||||||||| ||||| || || | ||| || | | ||| || | |
Sbjct 3756 ATGAAGGGTTGATTCCTTCTGGATGTTGTAGT--CTGCAAGTGTGCGTCCATCCTCAAGT 3813
Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254
||||| || || | || | | ||||||||| || || || ||||| ||||| ||||||
Sbjct 3814 TGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGAATT 3873
Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314
|| ||||| || | |||||| || || || || || |||| || || ||
Sbjct 3874 TTGGCTTTGACATTGTCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCTTTCCA 3933
Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || |||||||| ||||||||
Sbjct 3934 GTGAGGGTCTTTACAAAGATTTGCAT 3959
>seq72069
Length=2032
Score = 89.7 bits (98), Expect = 5e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171
||||||| | |||||||| || | || ||||| || |||||||| || ||||||||
Sbjct 328 TTCCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTG 269
Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231
| ||| | ||| ||||||||||| || || | |||| || ||||| ||||| |
Sbjct 268 CAAGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCCGGAG 209
Query 45232 GAATGCCTTCTTTATCTTG 45250
|||||||||| || || ||
Sbjct 208 GAATGCCTTCCTTGTCCTG 190
>seq71848
Length=4061
Score = 89.7 bits (98), Expect = 5e-13
Identities = 160/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|||||||| | || | |||||| || || ||||| |||||||| ||||| |||||||||
Sbjct 3799 ATTCCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCG 3858
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || |||| || || || ||| | || | | |||||||||||
Sbjct 3859 GCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGG 3918
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| || ||||| || || || || || || | || | || | |||||||| |||
Sbjct 3919 GGGATCCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCGGAGCTCTC 3977
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | ||| || ||||| ||||| || || || || |||||
Sbjct 3978 CACCTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 4028
>seq13742
Length=406
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| |||||||| | | || || || || || || ||||| ||||| || |||||
Sbjct 140 CCGCCGCGGAGACGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGCC 199
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| ||| || || | || ||||| ||| | |||| || ||||||||||| |||
Sbjct 200 AAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGGA 259
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| ||||| || || || || || |||| || | |||||| | ||| ||
Sbjct 260 ATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATCGTGTCGAAGCTCTCCACC 319
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|||||||| | || |||||||| | |||||| ||||| || ||||||
Sbjct 320 TCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCACAAAGATCTGCATC 367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450655733260480
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