Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq195423 711 0.0 seq170570 104 3e-17 seq83018 89.7 6e-13 seq93305 87.8 2e-12 seq83019 82.4 9e-11 >seq195423 Length=63734 Score = 711 bits (788), Expect = 0.0 Identities = 752/988 (76%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| ||||| Sbjct 631 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 690 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 |||||| || | | || |||||||| || | ||||||||||||| ||||| | Sbjct 691 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 750 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 || |||||||| |||||||| || | |||||| ||||| ||||||| ||| | |||||| Sbjct 751 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 810 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 ||||||||| || || || ||||| || || |||||||| || | ||||| || ||||| Sbjct 811 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 870 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 ||| ||| ||||||||||||| || ||||| || ||||||||||| ||||| || || Sbjct 871 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 930 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 || ||||| ||||||||||| | ||||| || || ||| || |||||||| Sbjct 931 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 990 Query 7894 ACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953 | | || | ||||||||| | ||||||||||| |||||||| || || || || || Sbjct 991 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 1050 Query 7954 GACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 8013 |||||||| ||||| | ||||||||| |||||||| |||||||||||||| || ||||| Sbjct 1051 TACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1110 Query 8014 GACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACC 8073 |||| |||| | ||||| ||||||||||| || ||||||||| | ||||| ||| || Sbjct 1111 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1170 Query 8074 TTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGC 8133 |||||||| || |||| | ||| ||||||| ||||| ||||| ||||| || ||||| Sbjct 1171 TTGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGC 1230 Query 8134 TACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 ||| ||||| ||||||||||| |||||| || |||||||||||||||||||||||| Sbjct 1231 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1290 Query 8194 TGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAG 8253 | | ||| | | |||||| | | || || | ||||||| || ||||| | Sbjct 1291 ACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 1350 Query 8254 CCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGA 8313 ||| ||||||| || || |||||||| || || || || || | ||| ||||| ||| Sbjct 1351 CCATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGA 1410 Query 8314 AGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGG 8373 || ||||| || |||||||| || || ||||| ||||| | || || |||| || || Sbjct 1411 AGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGG 1470 Query 8374 TTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAA 8432 |||||| || |||||||| || || ||||||||||| | ||| |||| || || ||| | Sbjct 1471 TTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA 1530 Query 8433 TAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGAT 8492 || || | | | ||||| ||||||| ||||| |||||||| | || || || | Sbjct 1531 -AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGT 1589 Query 8493 TGTTGGTGGAGGTTACCCAGTTACAGAA 8520 | | ||| |||| |||||||||||| Sbjct 1590 TTTCAGTGCTAGTTATCCAGTTACAGAA 1617 Score = 545 bits (604), Expect = 3e-150 Identities = 731/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || | || || ||||| |||| || ||||||||| || ||||| Sbjct 36964 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 36905 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | ||| || || || || || || || || ||||| ||| Sbjct 36904 TGAGCCGCCATCCAAGCACGAATACCCTCGTTTAAAAGAATATTTTTTGTGTAGAAAGTC 36845 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | ||| || || ||||| ||||||||||| | ||| Sbjct 36844 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAACGAAGTCATAAGCACGTAGG 36785 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || || || | | |||| | |||| | ||| | || || ||||| Sbjct 36784 TTCAGGGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 36725 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| |||||||| Sbjct 36724 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGAGACCAA 36665 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| ||||||||||||||||| || || |||| || || | ||| || | Sbjct 36664 AAGCGGTTAGCGGTGACCATCGAATAGGTTTCTTCGGCTTGCGTTGGGTTAAAAGCACGG 36605 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || || |||| |||||||||||||| |||||||| ||||| ||||| || ||||| Sbjct 36604 AATGTGTTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCGCCATGAATG 36545 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 ||||| |||| || | || || | ||| || || |||||||||||||| ||||| | Sbjct 36544 GCACATAGCAGAGCAGCGCCCAATACACCGGCAACTCCCATCATATGAAAGGGGTTCAAT 36485 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 ||||| || || || || || | || || | ||| || |||||||| || |||||||| Sbjct 36484 GTCCAATTATGAAACCCTTGGAAAAAAAGGATGAATCGAAATATCGCCGCTACACCAAAA 36425 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||||||||||| ||||| || || ||||| || || || ||||| ||||| Sbjct 36424 CTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 36365 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGA-CGTGC 6921 |||||||| ||| |||| || || |||||||| || || || | | || ||| || || Sbjct 36364 ACAGCAATTGGAGCAGAGAATGCTATTGCATTATAAGGTCGCA-ATTGAACAGAGCGAGC 36306 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | |||||||||||| || | || || ||||| || || ||||| Sbjct 36305 AAGTTCAAATTGACGTAACATGAAACCTATTAGTCCGAAAGCACCGTGTAGAGCAACAAA 36246 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| || || || | ||| |||||| |||||||| || ||||| |||||||| Sbjct 36245 AGTCCAAAGACCGCCTAATTGACACCAGCGAGTAAAATCTCCTTGTGCTTCAGGACCCCA 36186 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 ||| | | | ||||| | | | | ||||||||| || || || || || | ||| Sbjct 36185 TAGTAACAACAAAGAATGCGCTAAACTATTAGCAGGAGTCGAAACTGCGGCGGTTAAGAA 36126 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 || || || || | ||| ||| || | || || || ||||| || || || || Sbjct 36125 GTTGCAGCCTTCCAAATAGGAACTGGCTAATCCATGGGTATACCATGAAGTTACAAAGGT 36066 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 |||||| |||| |||||| || | || | || ||| ||| || || | || || || Sbjct 36065 TGTGCCTGTGAACCAACCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGGCCAGA 36006 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 36005 CCAACCTACAAAAACGAATCGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 35952 >seq170570 Length=388 Score = 104 bits (114), Expect = 3e-17 Identities = 135/183 (74%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 |||||||||||||| |||||||| |||||| ||||||| ||||||||||| || || | Sbjct 80 TCACCATCTTCAAATAAAGTATTTTCTACAATAGCACCATGAATAGCACATAGTAAAACA 139 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAG 6757 ||| || | ||| | || ||||||||||||| ||||| | |||| || | | Sbjct 140 GCACGAAATACACCAGAAAC-TCCATCATATGAAAGGGGTTTAATATCCAATTATAAGAC 198 Query 6758 CCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACC-AAACGACGGCGCAAAGAA 6816 || || | || | | ||| || ||||||| | ||||| |||||| ||| ||||||| Sbjct 199 CCTTGGAAAAAAAAGATGAACCGAAATATCGTCACTACACCAAAACGA-GGCTCAAAGAA 257 Query 6817 CCA 6819 || Sbjct 258 TCA 260 >seq83018 Length=2165 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 10205 AGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACAC 10264 ||| ||||||| || |||| | | || ||||||||| | ||||| | || | Sbjct 114 AGTTAAGTTCAGATTCCTTGTGTGTATAAATCACACAATCTGATTTTGGATATGCAATGC 173 Query 10265 AGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGAT 10324 | || || | |||| || ||||||| |||||||||||| ||| ||| ||| | Sbjct 174 ATGTAAGGACATAACCTTTCTCCATCTGGTTATCATCAAGGAATGATCCATCTGATTGGT 233 Query 10325 CTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGT 10384 | || | || || | | ||| || ||| | || ||||||||||| ||||| |||| Sbjct 234 CAACAGAGCCTGAAACCATCAGGCCAGCGCAAGTAGAGCAGGCACCAGCGCGGCATGAGT 293 Query 10385 AGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTC 10436 || ||| || || || || |||||||||| || || ||||| |||||| Sbjct 294 AGGGGAGCTCCATTCCGGCATCTTCAGCAGAGTCGAGGATGTAAGCATCGTC 345 >seq93305 Length=279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 6638 TCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGCACAGAGCAATGCT 6697 |||||||||||||| ||| |||| |||| |||||| || |||| |||||| |||| || Sbjct 74 TCACCATCTTCAAATAAAATATTTTCTATAGTAGCGCCATGAA-AGCACATAGCAGAGCA 132 Query 6698 CCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTT 6750 | || || | || || || |||||||||||||| ||||| | ||||| || Sbjct 133 GCGCCCAATACACAGGCAACTCCCATCATATGAAAGGGGTTCAAAGTCCACTT 185 >seq83019 Length=2865 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAAC 10262 ||||||||||||| || |||| | | || |||||||| || ||||| | ||| Sbjct 457 TCAGTAAAGTTCAGATTCCTTGTGTGTGTAAATTACACAATCCGATGTAGGATATGCAAC 516 Query 10263 ACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTG 10322 || || || | ||||| || ||||| | |||||||||||| ||| ||| ||| Sbjct 517 GCATGTAAGCACAAAACCTTTCTCCATCTGCTTATCATCAAGGAATGATCCATCTGATTG 576 Query 10323 ATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGA 10382 || || | || || | | | || |||||| | || ||||||||||| || || || Sbjct 577 GTCAACGGAGCCTGAAACCATCTGCCCAGCACAAGTAGAGCAGGCACCAGCCCGACATGA 636 Query 10383 GTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTA 10427 |||| || || || || | ||||| |||| || | ||||| Sbjct 637 GTAGGGTAGCTCCATTCCGGTATCTTCGGCAGAGTCTATGATGTA 681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620270183758720