Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq89547 132 6e-26
seq19092 84.2 3e-11
seq2111 82.4 9e-11
>seq89547
Length=5293
Score = 132 bits (146), Expect = 6e-26
Identities = 378/571 (66%), Gaps = 19/571 (3%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||||||||| || || ||||| | ||||| ||||| || || ||||| | ||
Sbjct 2856 GTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCCGGCATTAACCC 2915
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| ||
Sbjct 2916 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 2975
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG--AGCGGGACTTTGTATCAAACCACTTCATC 127708
|| ||||| | || | ||| ||||| | || | | || | ||| || | |
Sbjct 2976 AGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAGCC-----GTCGATCCAATTTAAC 3030
Query 127709 GCCCACTGTGCCTTT-TTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 127767
|||||| ||| |||| || ||| || || || |||| ||| || | |||||| ||
Sbjct 3031 GCCCAC-GTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTT 3089
Query 127768 CTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGA 127826
|||||| | ||| ||||||||||| | |||| || || || ||||| |||||
Sbjct 3090 CTTTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA 3148
Query 127827 CCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 127884
||| ||||| ||| | ||||||| | ||||| ||| | ||| |||||
Sbjct 3149 --TGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTC 3206
Query 127885 ATCGGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 127942
|| || || | || ||||| | || || || ||||| | ||||| ||
Sbjct 3207 --CGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCAAAGAAG 3264
Query 127943 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGA 128002
|| || | | | | | ||| | || || | || | |||| || ||||| | ||||
Sbjct 3265 GCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGA 3324
Query 128003 TCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGT 128062
|| | || ||||| || ||||| || |||||| | || || ||||| || | |
Sbjct 3325 TCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATT 3384
Query 128063 TCCCAGAGGTGGGGATACTTCAGGGGGAACA 128093
||||| | || ||||||| | |||||||
Sbjct 3385 TCCCAAATTTGTGGATACTGAATCGGGAACA 3415
>seq19092
Length=7288
Score = 84.2 bits (92), Expect = 3e-11
Identities = 227/340 (67%), Gaps = 8/340 (2%)
Strand=Plus/Minus
Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811
||| || || || || |||| ||| || || | || || |||||||| || |||||
Sbjct 4847 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 4788
Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 12869
|| || || | ||| || || | |||||||||| | | | | | || | | | |
Sbjct 4787 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 4730
Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCA 12929
|| | || ||||| |||||||| || | || || || || || ||| || |||
Sbjct 4729 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 4670
Query 12930 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988
||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| |
Sbjct 4669 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 4611
Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047
| | | | || | || || || || || |||||| || || || ||| || |
Sbjct 4610 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 4552
Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087
| |||||||| || ||||| || ||||||| ||||
Sbjct 4551 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 4512
>seq2111
Length=3567
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/87 (83%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 115961
|||||||||| || ||||||||||||||||||||||| |||||| | |||| || ||
Sbjct 1841 TAGATGTTGGAAGTATATGGCTCAAAGCACTCATTGTT-TCCAAGAATCTGGCTGGTTGA 1783
Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAG 115988
||| || ||||| ||||||| |||||
Sbjct 1782 GGCAGTTGGCATTGGTGCCACAAGAAG 1756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 611678273686080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |