Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq89547 132 6e-26 seq19092 84.2 3e-11 seq2111 82.4 9e-11 >seq89547 Length=5293 Score = 132 bits (146), Expect = 6e-26 Identities = 378/571 (66%), Gaps = 19/571 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||||||||| || || ||||| | ||||| ||||| || || ||||| | || Sbjct 2856 GTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCCGGCATTAACCC 2915 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 2916 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 2975 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG--AGCGGGACTTTGTATCAAACCACTTCATC 127708 || ||||| | || | ||| ||||| | || | | || | ||| || | | Sbjct 2976 AGCAAACGCGATTAATCTCTCCGCAAAAGTCTCCGAGCC-----GTCGATCCAATTTAAC 3030 Query 127709 GCCCACTGTGCCTTT-TTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTT 127767 |||||| ||| |||| || ||| || || || |||| ||| || | |||||| || Sbjct 3031 GCCCAC-GTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTT 3089 Query 127768 CTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGA 127826 |||||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 3090 CTTTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA 3148 Query 127827 CCATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTC 127884 ||| ||||| ||| | ||||||| | ||||| ||| | ||| ||||| Sbjct 3149 --TGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACCTC 3206 Query 127885 ATCGGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 127942 || || || | || ||||| | || || || ||||| | ||||| || Sbjct 3207 --CGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCAAAGAAG 3264 Query 127943 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGA 128002 || || | | | | | ||| | || || | || | |||| || ||||| | |||| Sbjct 3265 GCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGA 3324 Query 128003 TCCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGT 128062 || | || ||||| || ||||| || |||||| | || || ||||| || | | Sbjct 3325 TCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATT 3384 Query 128063 TCCCAGAGGTGGGGATACTTCAGGGGGAACA 128093 ||||| | || ||||||| | ||||||| Sbjct 3385 TCCCAAATTTGTGGATACTGAATCGGGAACA 3415 >seq19092 Length=7288 Score = 84.2 bits (92), Expect = 3e-11 Identities = 227/340 (67%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 12752 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAA 12811 ||| || || || || |||| ||| || || | || || |||||||| || ||||| Sbjct 4847 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 4788 Query 12812 GAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 12869 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 4787 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 4730 Query 12870 TGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCA 12929 || | || ||||| |||||||| || | || || || || || ||| || ||| Sbjct 4729 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 4670 Query 12930 A-CTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATT 12988 ||| ||| | |||||| ||||| ||||||||||| ||||||||||| ||||| | Sbjct 4669 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCGACACCAACAAACATCTCAACAAACTC 4611 Query 12989 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 13047 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 4610 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 4552 Query 13048 GGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 | |||||||| || ||||| || ||||||| |||| Sbjct 4551 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACC 4512 >seq2111 Length=3567 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 115961 |||||||||| || ||||||||||||||||||||||| |||||| | |||| || || Sbjct 1841 TAGATGTTGGAAGTATATGGCTCAAAGCACTCATTGTT-TCCAAGAATCTGGCTGGTTGA 1783 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAG 115988 ||| || ||||| ||||||| ||||| Sbjct 1782 GGCAGTTGGCATTGGTGCCACAAGAAG 1756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611678273686080