Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq89547 152 8e-32 seq235167 95.1 2e-14 >seq89547 Length=5293 Score = 152 bits (168), Expect = 8e-32 Identities = 461/704 (65%), Gaps = 15/704 (2%) Strand=Plus/Plus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 ||| ||| || || || ||||| || ||||| || |||| || | || ||||||| Sbjct 2666 CCAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCA 2725 Query 159804 GCAGC-CTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTC 159862 || | | |||| ||||| || ||| |||||| |||| ||||| ||||| || || Sbjct 2726 CCAACGCGCACGGC-AGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTC 2784 Query 159863 ACAATCTGCGAGACACGTTCGTACCCCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAG 159921 || | | | || || || | | |||| | || ||| | ||| || Sbjct 2785 ACTAACGCCTTCACGCGCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAG 2840 Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 |||||| || |||||||| || ||||| || || ||||| ||||| || || | | | Sbjct 2841 GCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAA 2900 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAA 160040 |||||||| | ||| ||| |||||||||||| || | ||||||| | || | || | Sbjct 2901 TCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCTGAGAAGA 2959 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCAT 160100 | |||||||||||| |||||||| | | ||||| ||||| | | | | | | Sbjct 2960 AAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCAAAA---GTCTCCGAGCCGT 3016 Query 160101 GGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGT 160160 | |||| || ||||| || |||||||||| ||| || | ||||| ||||| Sbjct 3017 CGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGT 3076 Query 160161 TAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220 ||| | | || || || | || ||||| ||| | | ||| |||||||| Sbjct 3077 GAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACA 3136 Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280 |||| | ||| | || |||||||| ||||| ||| |||||| |||||| Sbjct 3137 TTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCGA 3196 Query 160281 ACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCG 160340 ||| |||||| |||||||| | || || | || | ||||||| ||| | Sbjct 3197 CCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTG 3256 Query 160341 CAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCC 160400 ||||||| || | |||||| | || ||| || ||||||| | | || | |||| Sbjct 3257 CAAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC---TCCC 3313 Query 160401 AGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAA 160444 |||| | ||||| | | |||||| || || ||| ||||| Sbjct 3314 AGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAA 3357 >seq235167 Length=544 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/225 (70%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 |||||| || |||||||| ||||| || || || ||||| | |||||| || | | | || Sbjct 105 GCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAG 164 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAA 160040 ||||||||| | ||| ||| ||| | |||||| || | |||| || | | | | || | Sbjct 165 GCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCCGAGAAGA 223 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCAT 160100 | ||||| |||||| |||||||| | || ||||| | | | | | | | | | Sbjct 224 ATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGA---ATGTCTCCGAGCCGT 280 Query 160101 GGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCA 160145 | |||| || |||||| || ||||| || || | |||||||| Sbjct 281 CGATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCA 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792784762833280