Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq13742 123 3e-23 seq68514 118 1e-21 seq71848 113 5e-20 seq68153 113 5e-20 seq43778 98.7 1e-15 seq99008 96.9 4e-15 seq77946 93.3 5e-14 seq68470 91.5 2e-13 seq41899 89.7 6e-13 seq11653 84.2 2e-11 >seq13742 Length=406 Score = 123 bits (136), Expect = 3e-23 Identities = 145/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | | |||||| |||| ||||||||||| |||||||| Sbjct 175 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 234 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 235 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 294 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| |||| ||||| || | |||||||| ||||| |||| ||||| Sbjct 295 GTCGATCGTGTCGAAGCTC---TCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTT 351 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 352 CACAAAGATCTGCAT 366 >seq68514 Length=8688 Score = 118 bits (130), Expect = 1e-21 Identities = 163/223 (73%), Gaps = 9/223 (4%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || || ||||| || ||||| |||| | |||||| |||| ||| Sbjct 8197 ACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCG 8138 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| ||||| || || | ||||||||||| | ||| | | |||||||||| | Sbjct 8137 AGTTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGG 8078 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||||| ||| | | | ||||| |||| ||||| || | ||||| || Sbjct 8077 ATCTTGGCCTTGA-CGTTGTCGATTGTGTCGGAGCTC---TCCACTTCGAGGGTGATTGT 8022 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACAAA 46603 ||||| || || ||||| ||||| || ||||| || |||||| Sbjct 8021 CTTGCCGGTGAGGGTTTTCACAAATATCTGCATCTT-CACAAA 7980 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || || | ||||||||||||||| | || |||||| || || ||||| || | Sbjct 8443 CCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCA 8384 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || |||||||| || || || |||| ||||||||| || | || Sbjct 8383 AGCGTCCTTCCATCCTCCAGCTGCTTCCCTGCAAAGATCAGGCGCTGCTGATCAGGTGGG 8324 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | ||||||||| ||| || ||||| | | | ||||| |||| || Sbjct 8323 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGATGTTGTCAATGGTGTCAGAGCTC---TCG 8267 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| ||||| || || |||||||| ||||| || ||||| |||||| Sbjct 8266 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCATT 8216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || |||||||| || || |||||||| ||||| |||| | || || |||| ||| Sbjct 801 ACAAGATGCAAGGTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCG 742 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| |||||||| |||| | ||||||||||| || | | ||||||||| | Sbjct 741 AGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGG 682 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||| | | | | |||||| |||| || || || | || || || Sbjct 681 ATCTTGGCCTTCACGTTATCGATCGTGTCGGAGCTC---TCGACCTCGAGGGTAATCGTC 625 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| ||||| || ||||| ||||| Sbjct 624 TTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 593 >seq71848 Length=4061 Score = 113 bits (124), Expect = 5e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | |||||||| || || | || ||||| ||||| || || |||| Sbjct 3802 CCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCC 3861 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| |||| || ||||||||||||||||| || | | ||||||||| | || Sbjct 3862 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 3921 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 46542 | | ||||||||| ||||||| ||| | ||| | | | |||||| |||| || Sbjct 3922 ATCCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCGATCGTGTCGGAGCTC---TC 3977 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| |||| ||||| || || || ||||| || || || ||||| ||||| Sbjct 3978 CACCTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 4028 Score = 111 bits (122), Expect = 2e-19 Identities = 145/197 (74%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||| |||| ||||| || | || |||||||||||||||||||| Sbjct 3609 CTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCGAA 3668 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | | ||| |||||| |||||| ||| | ||| Sbjct 3669 GATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTCA-CGT 3727 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | |||||| |||| ||||| |||| ||||| || || || |||| ||| | Sbjct 3728 TGTCGATCGTGTCGGAGCTC---TCCACCTCCAGGGTGATCGTCTTCCCGGTCAACGTCT 3784 Query 46578 TAACAAAGATTTGCATT 46594 | || ||||| |||||| Sbjct 3785 TGACGAAGATCTGCATT 3801 >seq68153 Length=714 Score = 113 bits (124), Expect = 5e-20 Identities = 167/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || || | ||||||||||||||| | || ||||| || || ||||| || | Sbjct 285 TGCCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCG 344 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || | | || || ||||||||||| ||||| ||||| ||||||||||| | || Sbjct 345 CAAGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCG 404 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGAT 46540 | | | ||||||||| |||||| ||||| ||| | | | |||||| |||| Sbjct 405 GAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGAGCTC--- 460 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | ||||| || || ||||| || ||||| || || || ||||| Sbjct 461 TCAACTTCGAGTGTGATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 513 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||| |||| | ||||| |||| ||||| ||||| |||||||| Sbjct 551 TCCTTCTGGATATTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGTTGCTTTCCGGCGAAG 610 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| | ||||||||| | ||| | | ||||||||| |||||| ||||| Sbjct 611 ATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA 665 >seq43778 Length=4696 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||||| ||||||||| ||||| || || ||||| || | || || | | | || Sbjct 2835 CAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCTGCAAGGGTCCTCCCATC 2894 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || ||||||||||| || || ||||| | ||||||||| | || | || |||||| || Sbjct 2895 TTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGAATGCCCTCCTTATC 2954 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCCACCGTGAT 46557 |||||| ||| | | | | |||||| ||| || || |||| ||||| Sbjct 2955 TTGGATCTTGGCCTTCACATTATCAATCGTGTC---CGAACTCTCTACCTCCAGAGTGAT 3011 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || || ||||| |||||||| Sbjct 3012 TGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 3047 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| || ||| |||||| |||||||||||||| | | ||| ||| | || || Sbjct 2611 ACAAGATGTAAAGTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCC 2670 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| ||||| || ||||| | |||||| || | || | | ||||||||| | Sbjct 2671 AGCTGCTTCCCGGCAAAAATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGG 2730 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 || || ||| | | | | ||||| ||| || || |||| ||||||||| Sbjct 2731 ATTTTAGCCTTCACATTATCAATGGTGTCTGAACTC---TCAACCTCCAGGGTGATGGTT 2787 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || |||| || || || || || |||||| Sbjct 2788 TTTCCTGTCAATGTCTTCACGAAAATCTGCATT 2820 >seq99008 Length=1232 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| ||| || | |||| ||||||||||| |||||||| Sbjct 15 CTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 74 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 || | ||||||||||| | || | | |||||||||| |||||| ||||| Sbjct 75 GATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGA 130 >seq77946 Length=1578 Score = 93.3 bits (102), Expect = 5e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| ||| || | |||| ||||||||||| |||||||| Sbjct 1465 CTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGGCGAA 1524 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTT 46515 || | ||||||||||| | || | | |||||| ||| |||||| |||| Sbjct 1525 GATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTATCCTGGATCTTGGTCTT 1578 >seq68470 Length=2690 Score = 91.5 bits (100), Expect = 2e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| || | | ||||| |||| || || |||||||| || || Sbjct 626 CTCCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAA 567 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | | ||||||||| |||||| ||||| | Sbjct 566 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 507 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | |||||| |||| || || || | ||||| || || || || || ||||| Sbjct 506 ATCGATCGTGTCTGAGCTC---TCAACCTCGAGGGTGATCGTCTTCCCGGTTAGGGTTTT 450 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 449 GACAAAGATCTGCAT 435 >seq41899 Length=578 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/197 (72%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCT-GCTTGCCGGCGA 46460 ||||||||| || ||||| |||| |||| | |||| || | | |||||| ||||| Sbjct 193 CTCCTTTTGAATGTTGTAATCGGCGCGAGTCCAGCCGTCCTCAAAATTGCTTGCTGGCGA 134 Query 46461 ATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520 | || | | ||||||| | | ||| | | |||||||||| |||||| |||| | || Sbjct 133 AGATGAGCCTCTGCTGGCCCGGCGGAATCCCCTCCTTGTCCTGAATCTTCGTCTTCA-CG 75 Query 46521 TCGCC-ACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | ||||||| ||| ||||| ||| ||||||||||| || ||| ||| Sbjct 74 TTGTCGATCGTGTCGGAGCTC---TCCACCTCCTGAGTGATGGTTTTCCCGGTCGACGTC 18 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||| ||||| Sbjct 17 TTGACGAAGATCTGCAT 1 >seq11653 Length=224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | | ||||||||||| || |||||||| |||||||| Sbjct 151 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCTCGTCCTCAAGCTGCTTTCCGGCGAA 92 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 |||| ||||||||||| | || | | || |||||| |||||| ||||| Sbjct 91 GATCAGTCGCTGCTGGTCCGGTGGAATCCCTTCGTTGTCCTGGATCTTAGCCTTGA 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563553367805760