Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq68514 102 6e-17
seq68470 93.3 3e-14
seq43799 84.2 2e-11
>seq68514
Length=8688
Score = 102 bits (112), Expect = 6e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567
|| || | |||||||||| ||||||||| || || |||||||||||| ||| | ||
Sbjct 8200 AGGACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCT 8141
Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627
|| | ||| |||||| |||| || | ||||||||| |||| || | || || |||||
Sbjct 8140 TCGAGTTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCC 8081
Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686
|| || || | ||| | | | |||||| | ||| ||||| || | || |||||
Sbjct 8080 TGGATCTTGGCCTTGA-CGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGT 8022
Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| || || | ||||| || || ||||||||
Sbjct 8021 CTTGCCGGTGAGGGTTTTCACAAATATCTGCAT 7989
Score = 87.8 bits (96), Expect = 1e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588
|| || || || || ||||||||||| ||| |||| || | ||| || ||| | ||
Sbjct 555 TCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 496
Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648
|| | |||||||||||||| || | || || ||||| || || || | |||
Sbjct 495 ATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 437
Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707
| | | ||||| | ||| ||||| || | ||| || ||||| || |||| ||||| ||
Sbjct 436 GTCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCAC 377
Query 39708 GAAGATCTGCAT 39719
||||||||||||
Sbjct 376 GAAGATCTGCAT 365
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| | || ||||| |||| ||| | ||| || || || || || ||||| ||
Sbjct 8443 CCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC- 8385
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610
|| || | | |||| |||| || ||||| |||| || | ||||||||||| | |
Sbjct 8384 -AAGCGTCCTTCCATCCTCCAGCTGCTTCCCTGCAAAGATCAGGCGCTGCTGATCAGGTG 8326
Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| | ||||| ||||| |||||| || || | | | ||||| | ||| || |
Sbjct 8325 GGATCCCTTCCTTGTCCTGGATTTTTGCCTTGATGTTGTCAATGGTGTCAGAGCTCTCGA 8266
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||| ||| || || || ||||| | ||||| ||||||||||||||
Sbjct 8265 CTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 8217
>seq68470
Length=2690
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
||||| |||| ||| | || || || || || |||||||| || | | | | ||
Sbjct 1105 CGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCA 1046
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| || | ||||| || | || || |||||||||||||||| || | ||||| ||
Sbjct 1045 TCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTA 986
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| |||||| || | | | | |||||||| ||| || || ||||||||||||
Sbjct 985 TCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATT 926
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||| || || | || || || || |||||||||
Sbjct 925 GTTTTCCCAGTAAGGGTCTTAACAAATATCTGCATG 890
>seq43799
Length=2218
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|| || ||||| || | |||| |||||| || || ||||| || || | | | | ||
Sbjct 91 CGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCA 150
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| || | || || || ||||||| | | ||||||||| | || | || || |||
Sbjct 151 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 210
Query 39625 TCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682
|| |||||| ||| | | |||| | ||||| | ||||| || || | |||||
Sbjct 211 TCTTGAATTTTTGCTTTCACATTGTCGATG--GTGTCAGAACTTTCAACCTCAAGAGTAA 268
Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||||| || || | ||||| || |||||||||||
Sbjct 269 TTGTTTTTCCAGTGAGGGTTTTCACAAAGATCTGCAT 305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346359945073304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |