Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq19092 145 9e-30 seq2110 98.7 1e-15 seq80422 96.9 4e-15 seq145907 95.1 1e-14 seq89547 93.3 5e-14 >seq19092 Length=7288 Score = 145 bits (160), Expect = 9e-30 Identities = 313/462 (68%), Gaps = 12/462 (3%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 4865 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 4806 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| || || || | |||||||||| || | | Sbjct 4805 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 4748 Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | | |||| | | ||| |||| ||||||||||| ||||| | || ||||| || Sbjct 4747 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 4688 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || ||| | | || ||||| || || || || || ||||||||| Sbjct 4687 GGAGCATTCTCTTTGGCCTTCTTGAAAAGATCTCGGACTCTAGATGCACCGACACCAACA 4628 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || || || ||| | |||||| || Sbjct 4627 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGC 4569 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || ||| ||||||||||| || || ||||| ||| |||| || ||||| Sbjct 4568 AATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTT 4509 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||| || ||| | |||||||||| | ||| || || ||||| | | Sbjct 4508 TGGAATACGAGCTCCAACAGCTGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC---CAC 4452 Query 9641 TTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 |||| || || | ||| || | |||| || ||||||| Sbjct 4451 TTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 4410 >seq2110 Length=919 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| | ||||||||| |||||||| || || || || | ||| || | ||| | ||| Sbjct 389 CTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 330 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | | |||||| | | ||||||||||||| ||| ||| || || | || Sbjct 329 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGC 270 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||| | ||||||| |||| | | | || | || | || |||| Sbjct 269 AACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 212 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 211 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 162 >seq80422 Length=4294 Score = 96.9 bits (106), Expect = 4e-15 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 107157 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 1468 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 1409 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274 |||| | |||||||||| | | |||| | | | |||||||||| || ||| ||| Sbjct 1408 GAACCATCTTTGGGACATCATATGGTATATTTTAATAGCAGAATCAATATCATCCTTGTG 1349 Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAG 107334 || || || | || | ||| ||||| | || ||| |||| | | | || | || Sbjct 1348 AATTCCAATAGAAACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 1290 Query 107335 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 1289 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 1230 Query 107394 G 107394 | Sbjct 1229 G 1229 >seq145907 Length=1675 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 45 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 102 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 103 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 162 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || ||| || ||| | ||||| | ||| | || || ||||| |||||| Sbjct 163 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 222 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 ||||||| ||| ||||| | || ||| | |||| Sbjct 223 ACAAACAACTCAACAAACTCTGAGGCAGCACAT 255 >seq89547 Length=5293 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||||||||| || || | ||||||||||| | || ||||| | || Sbjct 2856 GTGGAGACCCTCATCTCGCGAGATCAACTCATTTGAGAACGTCAATCCCGGCATTAACCC 2915 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| || | |||| | || ||||| || ||| |||||||| || |||||||| || Sbjct 2916 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 2975 Query 117405 CGCAAACGC 117413 |||||||| Sbjct 2976 AGCAAACGC 2984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588222008237120