Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq195423 623 1e-173 seq29277 118 1e-21 seq29272 116 5e-21 seq195184 91.5 2e-13 seq163170 87.8 2e-12 >seq195423 Length=63734 Score = 623 bits (690), Expect = 1e-173 Identities = 740/998 (74%), Gaps = 4/998 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| |||| || | |||||||| || | |||||||| Sbjct 1626 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTT 1567 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCAT 179857 || ||| ||||||| || ||| | ||| | |||||| |||| || || |||||||||| Sbjct 1566 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCAT 1508 Query 179858 CGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTA 179917 |||||||| || || || || || || || |||||||| || |||| || || | || Sbjct 1507 TGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 1448 Query 179918 TGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTT 179977 ||| ||||| || || |||||||| || ||||| |||| || || ||| | || || Sbjct 1447 TGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTT 1388 Query 179978 CTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCA 180037 || || || |||||||| ||||| |||| || ||| | || || || ||||||| | Sbjct 1387 TTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 1328 Query 180038 ACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACT 180097 || | || | |||||| | |||| | | ||||||||||||||||||||||| Sbjct 1327 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACT 1268 Query 180098 TTCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTG 180156 | || || |||||||||| || ||||| ||| || |||||||| ||||| || || | Sbjct 1267 TAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAG 1209 Query 180157 CAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGC 180216 |||| ||||||| ||| | |||| || |||||||||| || ||||| | |||| Sbjct 1208 CAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGC 1149 Query 180217 CCCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCC 180276 | || || || ||||| || ||||| | |||| |||| ||||| || ||||||||||||| Sbjct 1148 CTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCC 1089 Query 180277 TGATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCG 180336 | |||||||| ||||||||| | || ||||| ||||| |||||||| || || ||| | Sbjct 1088 TTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTG 1029 Query 180337 CAATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCC 180396 | ||||| ||||| |||| |||||| || | | |||||||| |||| ||| || Sbjct 1028 CTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTG 969 Query 180397 AGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATG 180456 || ||||||| || |||||||| ||||| || || || ||||| ||||| || | Sbjct 968 CTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACG 909 Query 180457 GATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACT 180516 | || || || || |||||||||| ||||| |||||||| || ||||| | || | Sbjct 908 GTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATT 849 Query 180517 TCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCA 180576 |||||||||| || |||||||| || || |||||||||||||| | || | ||||| | Sbjct 848 TCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTA 789 Query 180577 TGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 180636 |||| |||||| | || |||||||| |||||||| || | ||||| |||||||||||| Sbjct 788 TGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTG 729 Query 180637 TGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACG 180696 | | || || ||||| || | | || || ||| || ||||||||||||||||| | Sbjct 728 TAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATG 669 Query 180697 AGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCT 180734 | ||||||||||| |||||||| || ||||| || ||| Sbjct 668 AACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 587 bits (650), Expect = 9e-163 Identities = 755/1036 (73%), Gaps = 9/1036 (1%) Strand=Plus/Plus Query 181408 ACCAAGGAGGGAATGG-----TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTT 181462 ||||| |||| || || ||||| || | ||||||||| | | ||||| || Sbjct 35931 ACCAAAGAGGAAAAGGATTTATTTGATATTATGGATGACTGGTTACGGAGGGACCGATTC 35990 Query 181463 GTCTTTGTGGGCTGGTCTGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGC 181522 || ||||| || |||||||| ||| | || ||||| ||| ||| | || | ||||| Sbjct 35991 GTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGT 36050 Query 181523 TGGCTCACTGGCACTACTTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTAC 181582 ||| |||| ||||| || ||||| || || ||||| ||||| ||||| || |||||| Sbjct 36051 TGGTTCACAGGCACAACCTTTGTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTAT 36110 Query 181583 CTTGAGGG-TGCTAATTTCCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCA 181641 | || || ||| || ||| | || || || || || || |||||| | | | | || Sbjct 36111 TTGGAAGGCTGC-AACTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCA 36169 Query 181642 TTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACT 181701 |||| | | |||| |||||||||||||| || || ||||| |||||| ||| | Sbjct 36170 TTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATT 36229 Query 181702 TGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCT 181761 || || || ||| ||||||| || || ||||| || |||| || || ||||| ||| | Sbjct 36230 AGGCGGTCTTTGGACTTTTGTTGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTT 36289 Query 181762 CAGGCAATTTGAACTTGCTCG-TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTT 181820 | ||||||||||||||||| ||| || | | ||||| || ||||| || || || | Sbjct 36290 ACGTCAATTTGAACTTGCTCGCTCTGTTCA-ATTGCGACCTTATAATGCAATAGCATTCT 36348 Query 181821 CCGGTCCTATTGCTGTATTCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTT 181880 | | ||| |||||||| || || |||||||| || || ||||| || || || || ||| Sbjct 36349 CTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTT 36408 Query 181881 GGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGG 181940 ||||||||||||| ||||| ||||| |||||||| || || ||| | || || |||| | Sbjct 36409 GGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAG 36468 Query 181941 GCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTG 182000 | |||||||||||||| | || ||||| ||||||||||| ||||| ||| | |||| | Sbjct 36469 GGTTTCATAATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCG 36528 Query 182001 GCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTG 182060 || | || | ||| ||||| || | ||||| || |||||| | | | |||| |||| Sbjct 36529 CTGCTCTGCTATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTG 36588 Query 182061 ACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGG 182120 | ||||| || ||| || || | |||| |||| |||||||||||||| |||| Sbjct 36589 ATGGTGCAAACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGG 36648 Query 182121 TTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGT 182180 | || || |||||||| |||||||| ||||| || |||| ||| |||||| | |||| Sbjct 36649 TCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGT 36708 Query 182181 TGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTA 182240 | |||||||||||| | ||||| || || | ||| | |||| ||| | | || | Sbjct 36709 TACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAG 36768 Query 182241 TTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAG 182300 | || || || || ||||| |||||||||||||| || ||||| |||||| | ||| | | Sbjct 36769 TCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGG 36828 Query 182301 AAGACCCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTG 182360 |||| || || || ||||| ||||||||||| || ||||| || || || ||| | |||| Sbjct 36829 AAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTG 36888 Query 182361 CATGGTTAGCACCAGTCGATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTAC 182420 | ||| | || | ||||| || ||||| ||| || | ||||||||||| || ||| Sbjct 36889 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 36948 Query 182421 CCAGAGGTAACGCACT 182436 || | || ||||| || Sbjct 36949 CCCGTGGAAACGCTCT 36964 >seq29277 Length=523 Score = 118 bits (130), Expect = 1e-21 Identities = 140/187 (75%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 171903 TATCTTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGT 171962 ||| |||| || || || || || || || ||||| |||||||| ||| | || ||| Sbjct 302 TATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTCATGCAGGGCTGGT 243 Query 171963 GCCTGTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGA-GCAATC 172021 | || || | |||||||| ||| ||| |||| || || |||||||| | || | Sbjct 242 TCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCAGGTAGTGTTGACCAGTCAGATGGAAGC 183 Query 172022 TTTCCTTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||| |||| ||||||||||| || ||||| | ||||| || ||||||||||||||||| Sbjct 182 TTTC-TTGAGGATGATCAAATAGATGCAGGTTATGTTCTCACTTGTGTTGCTTATCCTAC 124 Query 172082 AAGCGAT 172088 ||| ||| Sbjct 123 AAGTGAT 117 >seq29272 Length=1881 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 |||| || ||||| || ||||| ||| ||||| ||| || || ||| | || || || | Sbjct 1551 TTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTT 1492 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 | || |||| |||| ||| ||| | ||| || || || ||||| |||||| || | Sbjct 1491 GCTCTTCCTGTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTC 1432 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCG 172086 | |||||||||||||| | | ||| || ||||| || |||| ||||||||| ||||| | Sbjct 1431 TGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTG 1372 Query 172087 AT 172088 || Sbjct 1371 AT 1370 >seq195184 Length=127655 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||||||| Sbjct 14606 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 14665 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 14666 CCTACTTGGGGAG 14678 >seq163170 Length=29127 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 19920 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 19979 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 19980 CCTACTTGGGGAG 19992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608577146099520