Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq195423 515 5e-141 >seq195423 Length=63734 Score = 515 bits (570), Expect = 5e-141 Identities = 682/944 (72%), Gaps = 2/944 (0%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 ||||||||||||||||| | ||||| || ||| | || ||| | | ||| || || Sbjct 1577 TTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATT 1519 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || |||||||| || ||||| || ||||| ||||| || | ||||| || | || Sbjct 1518 ATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGA 1459 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | ||||| ||||| || || |||||||| || |||| | || ||||| Sbjct 1458 TCTCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATA 1399 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || ||||| || |||||||| ||| | |||||||||||||| || ||||| Sbjct 1398 GGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGC 1339 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| || | | | | |||||| | ||||| | | |||||||| | Sbjct 1338 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGT 1279 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | | || |||||||||||||| ||||||||| || || Sbjct 1278 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 1219 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 || || | || || ||||| ||||| | |||||| | ||||| || || ||| Sbjct 1218 CCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCT 1159 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| ||||| ||||| ||||||||||| || ||| | || ||||| || ||| Sbjct 1158 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAG 1099 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 || ||||| || ||||| || ||||||||| ||| ||||| || | ||||| || || Sbjct 1098 CACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCC 1039 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 ||||| || ||||||||||| | || || || | | ||||| ||||| ||||| Sbjct 1038 CTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAA 979 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || || ||||| | ||||| ||||| |||||||| || || || ||| Sbjct 978 AATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTA 919 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || |||||||| ||||| || | |||||||| |||||| |||||||| || | Sbjct 918 GCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 859 Query 170161 AGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGT 170220 | |||| |||||||| || | || ||||| ||| || | ||||| || || | ||| Sbjct 858 TCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGT 799 Query 170221 ATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATGCT 170280 || |||| ||||| |||||||| ||||||||||| || |||||||| || |||||| | Sbjct 798 ATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 739 Query 170281 AACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGGAA 170340 | || | | || |||| |||| || | || | || ||| | ||||||||| Sbjct 738 CAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAA 679 Query 170341 GTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 |||||||||||| | ||||| || |||||||| ||||||||||| Sbjct 678 GTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 635 Score = 376 bits (416), Expect = 3e-99 Identities = 705/1038 (68%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || || || || || |||| |||||||| Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || ||||||||| ||| || ||||| Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | || || || |||||| || Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCTTA 36131 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || |||||||| || |||| | | | ||| | | |||| || ||||| Sbjct 36132 ACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGT 36191 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 |||||||||||||| ||| ||| |||| ||| | || ||| | |||| ||||| Sbjct 36192 CCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTT 36251 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || |||| || | || ||||| |||||||||||| | | |||||||| | || | Sbjct 36252 GCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGC 36311 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 ||| | ||||||| || ||| | |||||||||||| || || || || | Sbjct 36312 TCTGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTT 36371 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 | || ||||| ||||||||||||||| |||||||||| || || || ||| Sbjct 36372 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 36431 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || || || || ||||| | ||| | || | ||||| || || || |||||||| Sbjct 36432 GTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 36491 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 || ||||| |||||||| ||||| || || | || | || | |||||||||||||| Sbjct 36492 CCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCAT 36551 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 || || || || | || || || | ||||| || |||| | Sbjct 36552 GGCGCTACCGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 36594 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||| ||||||||||| ||| | || || || | |||||||| || ||| | Sbjct 36595 CAAA----CACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTC 36650 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || ||||| || || ||||| ||||||| || || ||| | | ||| Sbjct 36651 ACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 36710 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 36711 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 36770 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 || ||||| || ||||| | || || || || || || || || || | ||||| ||| Sbjct 36771 GGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAA 36830 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || || || || |||||||||||||| || ||||| ||| | || || ||||| | || Sbjct 36831 GATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCT 36890 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548 |||||| | | || || || ||||| ||| | ||||||| || || || |||| Sbjct 36891 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 36950 Query 171549 AGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 36951 CGTGGAAACGCTCTTTAA 36968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577486108721920