Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq195423 616 2e-171 >seq195423 Length=63734 Score = 616 bits (682), Expect = 2e-171 Identities = 731/988 (74%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 167863 TTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 167922 ||||| | ||| |||| ||| | |||||||| || | |||||||| || || || Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 167923 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 167981 ||||| || ||| | ||| | |||||| ||||| || || |||||||| | |||||||| Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499 Query 167982 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 168041 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439 Query 168042 CATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCAT 168101 || || |||||||| || | ||| ||||| ||||| || | || || || || || Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379 Query 168102 CTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGT 168161 |||||||| ||||| | ||||| ||||| || || || ||||||| | ||| | || Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319 Query 168162 CTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAACTTTCATATCG 168221 | |||||| | | ||| | | |||||||| ||||| ||||||||| | || Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259 Query 168222 TTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGC 168281 | | ||||||||||| ||||| ||||||||| || || || || || ||||||| ||| Sbjct 1258 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGC 1199 Query 168282 AGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 168341 || ||| | | || || |||||||||| ||||| ||||||| ||||| || ||||| Sbjct 1198 TGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 1139 Query 168342 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 168401 ||| || || ||||| | |||| | || ||||| ||||||||||| || || ||||| || Sbjct 1138 CTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 1079 Query 168402 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 168461 ||||| ||| | ||||| ||||| ||||| || ||| | || ||||||||||| || Sbjct 1078 ATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGG 1019 Query 168462 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 168521 ||||| || ||| | | | || || || || |||| ||||| || || Sbjct 1018 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGG 959 Query 168522 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 168581 ||||| ||||| ||||| |||||||| || || |||||||| ||||| ||||| || || Sbjct 958 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGG 899 Query 168582 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 168641 || |||||||||||||| ||| |||||||| || || || || || |||||||| || Sbjct 898 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGC 839 Query 168642 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 168701 ||| |||||||| || || ||||||||||| || | || | ||| ||||| ||||| Sbjct 838 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 779 Query 168702 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 168761 | | || |||||||| |||||||| || | ||||| |||| |||||||| | || || Sbjct 778 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 719 Query 168762 CTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 168821 |||||| ||| || | || || ||| || |||||||||||||||||||| ||||| || Sbjct 718 CTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 659 Query 168822 ACACAACTTCCCACTCGATCTTGCTGCT 168849 || |||||||| || || || |||||| Sbjct 658 TCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 522 bits (578), Expect = 3e-143 Identities = 726/1016 (71%), Gaps = 6/1016 (1%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGT 169366 || ||| || | ||||||||| | | ||||| || || || | ||||||||||| Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011 Query 169367 CTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTT 169426 ||| | || |||| ||||||| | ||| | || || ||| |||| || ||| | ||| Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071 Query 169427 GTTACTTCCTGGTACACCCACGGACTCGC---TTCCAGTTACTTAGAAGGCGCTAACTTC 169483 || ||||| ||||| ||||| ||| | || |||| || || |||||| |||||| Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCC---TATTTGGAAGGCTGCAACTTC 36128 Query 169484 CTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGG 169543 | || || || || || |||||| | | | | || || || | || |||||| Sbjct 36129 TTAACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGG 36188 Query 169544 GGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTT 169603 ||||| ||||||||||| ||||| ||||||||||||||| || ||||| |||| ||| Sbjct 36189 GGTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTT 36248 Query 169604 GTAGCACTTCATGGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCA 169663 || || || || ||||| || | | | || ||||||||| | | || |||||| | || Sbjct 36249 GTTGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCT 36308 Query 169664 CGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTT 169723 || | || | || ||||||||||| || |||||||||| ||| |||||||| ||| Sbjct 36309 CGCTCTGTTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTT 36368 Query 169724 GTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTT 169783 || ||| || || || || ||||| || ||||| ||||||||||| || ||| Sbjct 36369 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 36428 Query 169784 GGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTG 169843 || ||| | || || || | ||| | | || | ||||| || || || ||||| ||| Sbjct 36429 GGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTG 36488 Query 169844 AATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATC 169903 || || || || |||||||| || || || | ||||||| || |||| | ||| || Sbjct 36489 AACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATT 36548 Query 169904 CATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAG 169963 ||||| | ||| ||||| || || || | |||||| ||||| ||||| || ||| Sbjct 36549 CATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGT 36608 Query 169964 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 170023 || ||| | | || || | ||||| || ||||| |||||||| || |||||||| ||| Sbjct 36609 GCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGG 36668 Query 170024 TCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTT 170083 || || ||||| || |||| ||||| || || |||||| | ||||| || ||||| ||| Sbjct 36669 TCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 36728 Query 170084 GTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 170143 || || || | ||| | |||| || |||| | | ||||| || || || || Sbjct 36729 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTA 36788 Query 170144 CGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACC 170203 |||||||| || ||||| ||||| ||| | ||||| |||||||| ||||||||||| Sbjct 36789 CGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 36848 Query 170204 TTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGAT 170263 |||||||| ||||| || || || || || || ||||||| ||| |||| || ||| Sbjct 36849 TTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGAT 36908 Query 170264 CAACCACATGAAAACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || || ||||||||| | || ||||| || || ||||| || | || ||||| || Sbjct 36909 CAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572761036751040