Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_015285.1
Length=174285
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 601 4e-167
seq93305 93.3 5e-14
>seq195423
Length=63734
Score = 601 bits (666), Expect = 4e-167
Identities = 730/989 (74%), Gaps = 4/989 (0%)
Strand=Plus/Minus
Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444
||||| | ||| ||||| || | |||||||| || | |||||||| || || ||
Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558
Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503
||||| || ||| | ||| | ||||| ||||| || || |||||||| | ||||||||
Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499
Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563
|| || || || ||||| || |||||||| || |||| || || | ||||| |||||
Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439
Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623
|| || |||||||| || |||| |||| || || ||| | || || || || ||
Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379
Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683
|||||||| ||||| ||||||| ||| | || || || ||||||| | || | ||
Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319
Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743
| |||||| | | || | | |||||||| ||||| |||||||| || |||
Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259
Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802
||| ||||||||||| ||||| ||| || ||||| || || |||||||||||||| | |
Sbjct 1258 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTG 1200
Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862
| || ||| || |||| || |||||||||| ||| ||||| | ||||| | || |
Sbjct 1199 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1140
Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922
|| |||||| ||||| | |||| |||| ||||| || ||||||||||| || ||||| |
Sbjct 1139 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1080
Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982
| ||||||||||| || || || ||||| ||||| || || || |||||||| ||||| |
Sbjct 1079 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1020
Query 162983 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 163042
|||| ||||| || ||| | || | || || || |||| ||| || || |
Sbjct 1019 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 960
Query 163043 GTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCG 163102
|||||| ||||||||||| ||||| || || || ||||| || || || ||||| || |
Sbjct 959 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 900
Query 163103 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162
| || ||||||||||||||||| |||||||| || ||||| || || |||||||| |
Sbjct 899 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 840
Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 163222
|||| |||||||| || || ||||||||||| || | || | || ||||| ||||
Sbjct 839 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 780
Query 163223 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 163282
|| | || |||||||| |||||||| || | ||||| |||| |||||||| | || |
Sbjct 779 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 720
Query 163283 CCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATG 163342
||||||| || || | || ||||| | ||||||||||||||||| || || ||||
Sbjct 719 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 660
Query 163343 CTCACAACTTCCCACTTGACCTGGCAGCT 163371
|||| |||||||| || ||||| || |||
Sbjct 659 CTCATAACTTCCCTCTAGACCTAGCTGCT 631
Score = 506 bits (560), Expect = 2e-138
Identities = 732/1023 (72%), Gaps = 10/1023 (1%)
Strand=Plus/Plus
Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680
|||||| | ||||||||||| | | | || || ||||| ||| | |||||||||||
Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011
Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740
|| | || |||| ||| ||| | || | || || ||| | || || ||||| ||
Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071
Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTG-AGGGTGCTAATTTTCT 163799
|| || || ||||| ||||||||| | || | ||||||| | | ||| ||| || || |
Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGC-AACTTCTT 36130
Query 163800 CACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 163858
|| || || || || || |||||| | | | | |||||| || || || || ||||
Sbjct 36131 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTATGGG 36189
Query 163859 GTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTG 163918
||||||| || || || ||||| |||||| ||| | || || || |||| |||||
Sbjct 36190 GTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTG 36249
Query 163919 TGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC 163978
| || || ||||| || || | || || ||||||||| | || ||||||||||||||||
Sbjct 36250 TTGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 36309
Query 163979 GC-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTC 164037
|| ||| || | | |||| || ||||| || || ||||||| ||| |||||||| ||
Sbjct 36310 GCTCTG-TTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTT 36368
Query 164038 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTT 164097
||| ||| || || || || || || ||||| || |||||||||| || || ||||
Sbjct 36369 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 36428
Query 164098 GGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTG 164157
|| || || || || || ||||| || | || | ||||| |||||||| ||||| |||
Sbjct 36429 GGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTG 36488
Query 164158 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATT 164217
|||||||| ||||||||||||||||| ||| || | |||| || |||||| ||| |||
Sbjct 36489 AACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATT 36548
Query 164218 CACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAG 164277
|| || | || || |||||||| || | ||||||||| || |||||||| ||
Sbjct 36549 CATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGT 36608
Query 164278 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 164337
|| ||| | | || || | ||||| || ||||| |||||||| || |||||||| |||
Sbjct 36609 GCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGG 36668
Query 164338 TCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 164397
|| || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| |||
Sbjct 36669 TCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 36728
Query 164398 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 164457
|| || || | ||| |||||| || |||| | | ||||| || || || ||
Sbjct 36729 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTA 36788
Query 164458 CGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACT 164517
|||||||| || || || || || || | ||||| ||||||||||| || ||||||
Sbjct 36789 CGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 36848
Query 164518 TTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGAC 164577
||||| || || || || | || ||||| || | ||||| ||| | || | ||
Sbjct 36849 TTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGAT 36908
Query 164578 CAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTT 164635
|||| || || ||| || | ||||| || || || || || | || || || ||||
Sbjct 36909 CAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTT 36966
Query 164636 AAT 164638
|||
Sbjct 36967 AAT 36969
>seq93305
Length=279
Score = 93.3 bits (102), Expect = 5e-14
Identities = 106/140 (76%), Gaps = 2/140 (1%)
Strand=Plus/Minus
Query 164120 TCCTCTTATTCCTTC-AAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGA 164178
|||| || || ||| || | | | |||| ||||||||||||||||| ||||||||||||
Sbjct 212 TCCTTTTTTTTTTTCCAATGGTCTTATAAGTGGACTTTGAACCCCTTTCATATGATGGGA 153
Query 164179 GTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAAT 164238
||||| || || | |||| || |||||| |||| |||| || | || | ||||||
Sbjct 152 GTTGCCTGTGTATTGGGCGCTGCTCTGCTATGTGCT-TTCATGGCGCTACTATAGAAAAT 94
Query 164239 ACATTGTATGAAGATGGAGA 164258
| || | ||||||||| ||
Sbjct 93 ATTTTATTTGAAGATGGTGA 74
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 555921786337600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |