Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq195423 601 4e-167 seq93305 93.3 5e-14 >seq195423 Length=63734 Score = 601 bits (666), Expect = 4e-167 Identities = 730/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 162385 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162444 ||||| | ||| ||||| || | |||||||| || | |||||||| || || || Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 162445 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 162503 ||||| || ||| | ||| | ||||| ||||| || || |||||||| | |||||||| Sbjct 1557 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCC 1499 Query 162504 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 162563 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 1498 TCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 1439 Query 162564 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 162623 || || |||||||| || |||| |||| || || ||| | || || || || || Sbjct 1438 TATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGAT 1379 Query 162624 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 162683 |||||||| ||||| ||||||| ||| | || || || ||||||| | || | || Sbjct 1378 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1319 Query 162684 ATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACCG 162743 | |||||| | | || | | |||||||| ||||| |||||||| || ||| Sbjct 1318 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1259 Query 162744 TCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCGG 162802 ||| ||||||||||| ||||| ||| || ||||| || || |||||||||||||| | | Sbjct 1258 TCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTG 1200 Query 162803 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 162862 | || ||| || |||| || |||||||||| ||| ||||| | ||||| | || | Sbjct 1199 CTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 1140 Query 162863 TCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATC 162922 || |||||| ||||| | |||| |||| ||||| || ||||||||||| || ||||| | Sbjct 1139 TCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 1080 Query 162923 CCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACG 162982 | ||||||||||| || || || ||||| ||||| || || || |||||||| ||||| | Sbjct 1079 CATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 1020 Query 162983 GTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATG 163042 |||| ||||| || ||| | || | || || || |||| ||| || || | Sbjct 1019 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAG 960 Query 163043 GTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCG 163102 |||||| ||||||||||| ||||| || || || ||||| || || || ||||| || | Sbjct 959 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTG 900 Query 163103 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162 | || ||||||||||||||||| |||||||| || ||||| || || |||||||| | Sbjct 899 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGG 840 Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 163222 |||| |||||||| || || ||||||||||| || | || | || ||||| |||| Sbjct 839 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 780 Query 163223 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 163282 || | || |||||||| |||||||| || | ||||| |||| |||||||| | || | Sbjct 779 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 720 Query 163283 CCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATG 163342 ||||||| || || | || ||||| | ||||||||||||||||| || || |||| Sbjct 719 CCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 660 Query 163343 CTCACAACTTCCCACTTGACCTGGCAGCT 163371 |||| |||||||| || ||||| || ||| Sbjct 659 CTCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 506 bits (560), Expect = 2e-138 Identities = 732/1023 (72%), Gaps = 10/1023 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || || ||||| ||| | ||||||||||| Sbjct 35952 TTTGATATTATGGATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGC 36011 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || || ||| | || || ||||| || Sbjct 36012 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTT 36071 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTG-AGGGTGCTAATTTTCT 163799 || || || ||||| ||||||||| | || | ||||||| | | ||| ||| || || | Sbjct 36072 GTAACTTCATGGTATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGC-AACTTCTT 36130 Query 163800 CACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 163858 || || || || || || |||||| | | | | |||||| || || || || |||| Sbjct 36131 AACCGCCGCAGTTTCGACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTATGGG 36189 Query 163859 GTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTG 163918 ||||||| || || || ||||| |||||| ||| | || || || |||| ||||| Sbjct 36190 GTCCTGAAGCACAAGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTG 36249 Query 163919 TGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC 163978 | || || ||||| || || | || || ||||||||| | || |||||||||||||||| Sbjct 36250 TTGCTCTACACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 36309 Query 163979 GC-CTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTC 164037 || ||| || | | |||| || ||||| || || ||||||| ||| |||||||| || Sbjct 36310 GCTCTG-TTCAATTGCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTT 36368 Query 164038 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTT 164097 ||| ||| || || || || || || ||||| || |||||||||| || || |||| Sbjct 36369 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTT 36428 Query 164098 GGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTG 164157 || || || || || || ||||| || | || | ||||| |||||||| ||||| ||| Sbjct 36429 GGTGTAGCGGCGATATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTG 36488 Query 164158 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATT 164217 |||||||| ||||||||||||||||| ||| || | |||| || |||||| ||| ||| Sbjct 36489 AACCCCTTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATT 36548 Query 164218 CACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAG 164277 || || | || || |||||||| || | ||||||||| || |||||||| || Sbjct 36549 CATGGCGCTACCGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGT 36608 Query 164278 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 164337 || ||| | | || || | ||||| || ||||| |||||||| || |||||||| ||| Sbjct 36609 GCTTTTAACCCAACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGG 36668 Query 164338 TCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 164397 || || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 36669 TCTCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 36728 Query 164398 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 164457 || || || | ||| |||||| || |||| | | ||||| || || || || Sbjct 36729 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTA 36788 Query 164458 CGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACT 164517 |||||||| || || || || || || | ||||| ||||||||||| || |||||| Sbjct 36789 CGTGCTTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 36848 Query 164518 TTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGAC 164577 ||||| || || || || | || ||||| || | ||||| ||| | || | || Sbjct 36849 TTCTACACAAAAAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGAT 36908 Query 164578 CAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTT 164635 |||| || || ||| || | ||||| || || || || || | || || || |||| Sbjct 36909 CAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTT 36966 Query 164636 AAT 164638 ||| Sbjct 36967 AAT 36969 >seq93305 Length=279 Score = 93.3 bits (102), Expect = 5e-14 Identities = 106/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 164120 TCCTCTTATTCCTTC-AAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGA 164178 |||| || || ||| || | | | |||| ||||||||||||||||| |||||||||||| Sbjct 212 TCCTTTTTTTTTTTCCAATGGTCTTATAAGTGGACTTTGAACCCCTTTCATATGATGGGA 153 Query 164179 GTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAAT 164238 ||||| || || | |||| || |||||| |||| |||| || | || | |||||| Sbjct 152 GTTGCCTGTGTATTGGGCGCTGCTCTGCTATGTGCT-TTCATGGCGCTACTATAGAAAAT 94 Query 164239 ACATTGTATGAAGATGGAGA 164258 | || | ||||||||| || Sbjct 93 ATTTTATTTGAAGATGGTGA 74 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555921786337600