Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq195423 621 4e-173 >seq195423 Length=63734 Score = 621 bits (688), Expect = 4e-173 Identities = 721/979 (74%), Gaps = 2/979 (0%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | || |||||| | ||||| || || | |||||||| || ||| ||||||||||| Sbjct 1608 TGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 1549 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | ||||| ||||| || || ||||||||| | | ||||||||| || || Sbjct 1548 ACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGA 1490 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || || ||||| || ||||| ||| |||| || || | ||||| ||||| || || || Sbjct 1489 TATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTC 1430 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 |||||| || ||||| ||||| ||||| ||| | || || || || || |||||||| Sbjct 1429 TGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC 1370 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 ||| || | || || ||||| |||||||| ||||||| | || | ||| | ||||| Sbjct 1369 GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 1310 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | |||| | | || |||||||||||||||||||| || |||||| ||||| Sbjct 1309 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 1250 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 |||||| ||||| ||||||||| || ||||| || || ||||| ||||||| ||| | Sbjct 1249 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTT 1190 Query 167516 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTAC 167575 |||| || |||||||||| ||| ||||| | |||||||| || ||||||||||| Sbjct 1189 GATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTAC 1130 Query 167576 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 167635 ||||| | |||| |||| ||||| || |||||||||||||| |||||||| ||||| || Sbjct 1129 TTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 1070 Query 167636 GCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695 | | ||||| ||||| ||||||||||| || || |||||||| ||||| ||||| |||| Sbjct 1069 GTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 1010 Query 167696 TACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTT 167755 |||||| || | | |||||||| |||| ||| || || ||||||| || Sbjct 1009 AACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATT 950 Query 167756 CGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGAT 167815 |||||| || ||||| || ||||| ||||| |||||||| ||||| || || || |||| Sbjct 949 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGAT 890 Query 167816 CTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCC 167875 ||||||||| || |||||||| || || || | || |||||| |||| || ||||| Sbjct 889 CTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCC 830 Query 167876 TGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGG 167935 ||| || |||||||||| |||||| | || || Sbjct 829 TGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGG 770 Query 167936 TTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGA 167995 |||||| |||||||| ||| | |||||||| ||| || | ||| ||||| || Sbjct 769 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGA 710 Query 167996 CGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 168055 | | || |||||| || ||||||||||||||||| || ||||||||||| ||||| Sbjct 709 TATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 650 Query 168056 CCCTCTCGACCTTGCTGCT 168074 |||||| ||||| |||||| Sbjct 649 CCCTCTAGACCTAGCTGCT 631 Score = 583 bits (646), Expect = 1e-161 Identities = 732/1002 (73%), Gaps = 2/1002 (0%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| || ||||||||||| ||||||||||| || | || ||| Sbjct 35964 GATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTT 36023 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || ||| ||| | ||| | || |||||| | || || || | || || || ||| Sbjct 36024 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGG 36083 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 ||||| || || || || ||||||||| |||| ||| ||||| | || || |||||| Sbjct 36084 TATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGCAACTTCTTAACCGCCGCAGTT 36143 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 ||||| || || | | | |||||| | || | || ||||||||||| |||||| Sbjct 36144 TCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAA 36203 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 || ||||| | ||||||||| | || || || ||| ||||||| || || ||||| Sbjct 36204 GGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGGT 36263 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTAT 168853 ||||||| ||||| ||||||||| | ||||| |||||||| || || ||| || | | Sbjct 36264 GCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAAT-T 36322 Query 168854 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCT 168913 || || || ||||| || || ||||||| ||| || |||||||||||| || || || Sbjct 36323 GCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCT 36382 Query 168914 CATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAAT 168973 || || || || ||||| || ||||||| || || || ||| || || | || || Sbjct 36383 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGAT 36442 Query 168974 CTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCATAT 169033 || |||||| | || || | ||||| || ||||| |||||| |||| || |||||||| Sbjct 36443 ATTTCGATTCATCCTTTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCATAT 36502 Query 169034 GATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGT 169093 |||||| || || ||| | ||||| | || |||| | |||||||||||| | ||| || Sbjct 36503 GATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTACCGT 36562 Query 169094 AGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCAC 169153 ||| |||||| | | | |||||||||| ||||| || ||| || ||| || || Sbjct 36563 AGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCCAAC 36622 Query 169154 TCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGG 169213 || | || || |||||||| ||||| || || ||||| || |||||||| |||||||| Sbjct 36623 GCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGG 36682 Query 169214 TATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGG 169273 |||| || ||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 36683 GGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 36742 Query 169274 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 169333 | | |||| ||| | | || | | || || || || ||||| |||||||||||||| Sbjct 36743 TTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTT 36802 Query 169334 TGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAA 169393 |||||||| || ||| | ||||| |||||||| || |||||||| |||||||| || || Sbjct 36803 CGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAA 36862 Query 169394 CATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGAGAA 169453 || || || ||||| ||| ||||||| ||| | || || ||||| |||||||| || Sbjct 36863 TATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 36922 Query 169454 CTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 | || | ||||||||||| || || ||||| || || || || Sbjct 36923 CCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 36964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 22395 TCCTATTGCCCTTATAGCTCAGTGGTAGAGCAACGCTTTTGTAAAGCGTAGGTCGTTGGT 22454 ||| ||||||||| || ||||||||||||| ||||| | |||| ||||| ||| | ||| Sbjct 34562 TCCAATTGCCCTTTTAACTCAGTGGTAGAGTAACGCCATGGTAAGGCGTAAGTCATCGGT 34621 Query 22455 TCAAATCCGACTGGGGGCTTT 22475 |||||||||| |||||||| Sbjct 34622 TCAAATCCGATAAGGGGCTTT 34642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558936771491200