Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq195423 614 7e-171 seq9524 95.1 1e-14 seq170570 87.8 2e-12 >seq195423 Length=63734 Score = 614 bits (680), Expect = 7e-171 Identities = 709/949 (75%), Gaps = 8/949 (1%) Strand=Plus/Minus Query 181836 GGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCTGT-TTCATCGT 181894 |||||||||||||| |||||||||| ||| | ||| | ||||| ||||| || || | Sbjct 1575 GGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTAT 1517 Query 181895 TGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCCGTAGCTGGTTC 181954 || ||| | || || ||||| || ||||| |||||||| || ||||| || |||| || Sbjct 1516 CGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATC 1457 Query 181955 ACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCCAACGCAATTGG 182014 || | ||||| ||||| || || |||||||| || | || | || || || || Sbjct 1456 TCTACTTTATGGAAACAATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGG 1397 Query 182015 TCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTGTATAACGGTGG 182074 | | || || ||||| || |||||||| || || ||||||| ||| | || || || || Sbjct 1396 TTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGG 1337 Query 182075 TCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCT---ACATGGGACG 182131 ||||| | || ||||| | |||||| | | || | || || | ||||||| || Sbjct 1336 TCCTTATGAGCTAATTGTTCTACACTTCTTACTTGG--TGTA-GCTTGTTACATGGGTCG 1280 Query 182132 TGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGC 182191 ||||||||||||| || ||| | ||||||||||| ||||| ||| ||||| || || Sbjct 1279 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 1220 Query 182192 TCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAAGGTTCGTTCTC 182251 ||| || || ||||| ||||||| ||||| |||| || |||||||||| || || Sbjct 1219 TCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTC 1160 Query 182252 CGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAAGCTGA 182311 |||| ||||| || |||||||| || || ||||| | ||| | || ||||| ||||| Sbjct 1159 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGA 1100 Query 182312 GCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTATTCGGTGGTTC 182371 ||||||||| |||||||| || ||||||||||| || ||||| ||||||||||| || || Sbjct 1099 GCACAACATCCTTATGCACCCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTC 1040 Query 182372 ACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGA 182431 || || ||||| ||||| ||||| ||||| || ||| | || | || || || || Sbjct 1039 CCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGA 980 Query 182432 GCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGT 182491 | || || || ||||||| ||||||||||| ||||| || ||||| ||||| Sbjct 979 AAATGAATCTGCTAATGCAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGT 920 Query 182492 TGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAACTCCCG 182551 || || || || || || || || |||||||||||||| || |||||||| || || Sbjct 919 AGCTGCTCACGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCG 860 Query 182552 TTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGG 182611 ||| || || |||||||| ||||| |||||||| || || ||||||||||| || | || Sbjct 859 TTCTTTACATTTCTTCCTGGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGG 800 Query 182612 TGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGG 182671 | | ||| ||||| |||||| | || |||||||| |||||||| || | ||||| | Sbjct 799 TATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAG 740 Query 182672 TCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGA 182731 ||| |||||||| |||| || ||||| ||| | | || |||||| ||||||||||| Sbjct 739 TCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGA 680 Query 182732 AGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCT 182780 |||||||||||| ||||| || || |||||||| ||||| || |||||| Sbjct 679 AGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 631 Score = 609 bits (674), Expect = 3e-169 Identities = 745/1011 (74%), Gaps = 8/1011 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || || || ||||| || |||||||| || | || || Sbjct 35964 GATGACTGGTTACGGAGGGACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTT 36023 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || ||| ||| | || | || |||||| | || |||||| | ||||| || ||| Sbjct 36024 CCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGG 36083 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 183371 |||||||||||| | || ||||||| | ||||| ||| ||||| | || || || || Sbjct 36084 TATACCCATGGATTAGCCAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCCGCAGT 36142 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 ||||| |||||| | | | | |||||| | ||||||| ||||||||||| | || Sbjct 36143 TTCGACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACA 36202 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 ||| || ||| |||||||| ||| | || || || |||| |||||| || || ||||| Sbjct 36203 AGGAGATTTTACTCGCTGGTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGG 36262 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 ||| || | || || ||||||||| | || || |||||||||||||||| || | Sbjct 36263 TGCTTTCGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAATT 36322 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| || || ||||||| ||| |||||||||||||| ||||||||| Sbjct 36323 GCGACCTTATAATGCAATAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCT 36382 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 || |||||||| ||||||||| ||||||||||| |||||||| || ||||| || || Sbjct 36383 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGAT 36442 Query 183672 CTTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCA 183728 ||| ||| |||| || |||| ||||||| || || ||||| || |||||||| || Sbjct 36443 ATTTCGATTCATCCTTTTTTTCC--AAGGGTTT-CATAATTGGACATTGAACCCCTTTCA 36499 Query 183729 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCAC 183788 ||||||||||||||| ||| || | || | || || || |||| || ||||| | || Sbjct 36500 TATGATGGGAGTTGCCGGTGTATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTAC 36559 Query 183789 AGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTC 183848 ||||| ||||| || | ||||||||| || |||||||||||| || ||| | | Sbjct 36560 CGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCC 36619 Query 183849 CACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTT 183908 || |||| ||||| || ||||| ||||| || || || || || ||||| |||||||| Sbjct 36620 AACGCAAGCCGAAGAAACCTATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTT 36679 Query 183909 CGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCAT 183968 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 36680 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 36739 Query 183969 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGA 184028 ||| | ||| | | || |||| | | || || || || || || ||||||||||| Sbjct 36740 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGA 36799 Query 184029 TTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAA 184088 || || || || ||| | ||||| |||||||| ||||||||||| ||||||||||| Sbjct 36800 CTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAA 36859 Query 184089 GAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGA 184148 || || ||| | || || || | ||||| ||| | || || ||||| || ||||| Sbjct 36860 AAATATTCTTTTAAACGAGGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 36919 Query 184149 GAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 || ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 36920 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATG 36970 >seq9524 Length=8324 Score = 95.1 bits (104), Expect = 1e-14 Identities = 208/313 (66%), Gaps = 18/313 (6%) Strand=Plus/Minus Query 182280 ACATTCAACTATATGTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCAC 182339 || ||||||| ||| | || ||||| |||||||||| ||||||| ||||| | |||||| Sbjct 895 ACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAGCATTCTTGTGCATTCATTCCAC 836 Query 182340 ATGTT-------GGGTGTAGCAGGTGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGG 182392 ||||| || |||| |||| || || ||||| || |||||||| Sbjct 835 ATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGGTTCCCT----------ATGCACGG 786 Query 182393 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGG 182452 || ||||| || ||| | |||| || || || || | || || | || | | Sbjct 785 TTACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATGAATCTCCCAAGGAAAG 726 Query 182453 TTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGG 182512 |||| || |||| ||| || || || || | || || | || |||| || || || Sbjct 725 ATACAGATTTGGTCCAGAGGAGGAAACTTACGATATTGTATCTGCTCATGTTTATTTTGG 666 Query 182513 TCGTTTGAT-CTTCCAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 182571 ||||| ||||| ||| || ||| ||| || | ||| || || |||||||| | Sbjct 665 CTTATTGATACTTCCGATATGCTGGTTTCCGCAATTCTCATTCTTTACATTTCTTCCTAG 606 Query 182572 CTGCATGGCCTGT 182584 ||| |||||||| Sbjct 605 ATGCTTGGCCTGT 593 >seq170570 Length=388 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 183629 AGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGT 183688 |||||| || ||||||| ||| |||| || |||| | || ||| | ||| | || | Sbjct 267 AGTCTTG-TGATTCTTTGAGCCTCGTTTTGGTGTAGTGACGATATTTCGGTTCATCTTTT 209 Query 183689 TCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTA 183748 | | || || | | || |||| ||||||||||| |||||||| |||||| ||||| Sbjct 208 TTTTCCAAGGGTCTTATAATTGGATATTAAACCCCTTTCATATGAT-GGAGTTTCTGGTG 150 Query 183749 TACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATG 183808 || | | | | |||| ||||||| ||||||| | ||||| ||||| || | || Sbjct 149 TATTTCGTGCTGTTTTACTATGTGCTATTCATGGTGCTATTGTAGAAAATACTTTATTTG 90 Query 183809 AAGATGGAGA 183818 ||||||| || Sbjct 89 AAGATGGTGA 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609872473054400