Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_015289.1
Length=176184
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 659 0.0
>seq195423
Length=63734
Score = 659 bits (730), Expect = 0.0
Identities = 735/979 (75%), Gaps = 2/979 (0%)
Strand=Plus/Minus
Query 164773 TGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCC 164832
||| | ||| ||| | ||||| ||||| | |||||||| |||||| | ||||||||
Sbjct 1608 TGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 1549
Query 164833 TGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGA 164891
||| | |||| || | ||| ||||||| || ||||| |||||||| || || ||
Sbjct 1548 ACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGA 1490
Query 164892 CATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTC 164951
||||| ||||||||||||||||| | || |||||| | || || ||||| || || ||
Sbjct 1489 TATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTC 1430
Query 164952 TGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGC 165011
|||||| | |||| ||||| || || || | || || || || || ||||||||
Sbjct 1429 TGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC 1370
Query 165012 TGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTT 165071
||| || | ||||||||||| ||||| || |||||||| || | |||| | |||||
Sbjct 1369 GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 1310
Query 165072 CCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTAT 165131
| | | ||||||||||| ||||||||||||||||||||||| || ||| || |||||
Sbjct 1309 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 1250
Query 165132 GCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCT 165191
||||||||||||| || |||||| || ||||| || || || | || |||||| |
Sbjct 1249 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTT 1190
Query 165192 GGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTAC 165251
| |||| || |||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 1189 GATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTAC 1130
Query 165252 TTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACAT 165311
||| || | ||| | || ||||| || || || ||||| |||||||| || ||||||||
Sbjct 1129 TTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 1070
Query 165312 GCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGT 165371
| | ||||| ||||| |||||||| || || || ||| |||||||||||| | ||
Sbjct 1069 GTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 1010
Query 165372 TACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTT 165431
|| || | || | || || || |||| || | || ||||| | ||
Sbjct 1009 AACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATT 950
Query 165432 TGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCAT 165491
|| ||||| ||||| || ||||| ||||| ||||| ||||| || || || || | ||
Sbjct 949 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGAT 890
Query 165492 TTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCC 165551
|||||||| || ||||||||||| ||||| | || |||||||| || || |||||
Sbjct 889 CTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCC 830
Query 165552 TGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGG 165611
|||||| |||||||||||||||||| | ||| ||||||| ||||| |||||| | || ||
Sbjct 829 TGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGG 770
Query 165612 TTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGA 165671
|||||| |||||||| ||| | ||||||||||| | || ||| ||||||||
Sbjct 769 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGA 710
Query 165672 CGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTT 165731
|| | || |||||| || |||||||||||||||||||| ||||| ||||| |||||
Sbjct 709 TATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 650
Query 165732 CCCCCTCGACCTCGCTGCT 165750
||| || ||||| ||||||
Sbjct 649 CCCTCTAGACCTAGCTGCT 631
Score = 574 bits (636), Expect = 5e-159
Identities = 724/989 (73%), Gaps = 4/989 (0%)
Strand=Plus/Plus
Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250
|| || ||||||||||| ||||||||||| || | || |||| ||| ||| | |||
Sbjct 35982 GACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 36041
Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310
| || |||||| |||| || || || || || || |||||||| |||||| | ||
Sbjct 36042 TTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGGTATACCCATGGATTAGCC 36101
Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGC 166369
|| ||| |||| || ||||| ||| | || || |||||||| ||||| || ||
Sbjct 36102 AGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAG 36160
Query 166370 TATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 166429
| | | |||||| | | | || ||||||||||| || ||||| ||||| | ||
Sbjct 36161 TTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTG 36220
Query 166430 GTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGG 166489
||| ||| | || || |||||| | ||||||||||| ||||||||||| | ||||| ||
Sbjct 36221 GTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGGTGCTTTCGGACTAATAGG 36280
Query 166490 TTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAA 166548
||||||| | || || |||||| | ||||| ||| | | | || || || |||||||
Sbjct 36281 TTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAAT-TGCGACCTTATAATGCAA 36339
Query 166549 TCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTC 166608
| || || |||| ||| |||||||| || ||| ||| || || || || || || ||||
Sbjct 36340 TAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTC 36399
Query 166609 AATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTT 166668
| || ||||||| || || || ||| || || | || || || |||||| ||||||
Sbjct 36400 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTT 36459
Query 166669 TCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTA 166728
| | ||||| || || || |||||| ||||||| |||||||||||||| || || |||
Sbjct 36460 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTG 36519
Query 166729 TTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATC 166788
| | || | ||| |||| | |||||| ||||| | ||| ||||| || ||| | | |
Sbjct 36520 TATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTG 36579
Query 166789 AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCT 166848
|||||||||| ||||| || ||| || || || | || |||| ||||||||||
Sbjct 36580 AAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCT 36639
Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATA 166908
|||| ||||| || || ||||||| ||||||||| ||||| || |||| ||| ||||
Sbjct 36640 ATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATA 36699
Query 166909 AGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCA 166968
| | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| |
Sbjct 36700 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 36759
Query 166969 TCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAA 167028
| || | | || || || || ||||| |||||||||||||| |||||||| ||| |
Sbjct 36760 TTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCC 36819
Query 167029 GGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGG 167088
| ||||| || |||||||| ||||| || ||||| || || || ||||| || || ||||
Sbjct 36820 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGG 36879
Query 167089 GTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAG 167148
|||| ||| |||||||||| || ||||| |||||||| | | |||||||||| |
Sbjct 36880 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 36939
Query 167149 AGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177
||||||| || | || |||||||| |||
Sbjct 36940 AGGTTCTACCCCGTGGAAACGCTCTTTAA 36968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561980470789120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |