Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq195423 659 0.0 >seq195423 Length=63734 Score = 659 bits (730), Expect = 0.0 Identities = 735/979 (75%), Gaps = 2/979 (0%) Strand=Plus/Minus Query 164773 TGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCC 164832 ||| | ||| ||| | ||||| ||||| | |||||||| |||||| | |||||||| Sbjct 1608 TGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 1549 Query 164833 TGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGA 164891 ||| | |||| || | ||| ||||||| || ||||| |||||||| || || || Sbjct 1548 ACTTTATTGACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGA 1490 Query 164892 CATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTC 164951 ||||| ||||||||||||||||| | || |||||| | || || ||||| || || || Sbjct 1489 TATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTC 1430 Query 164952 TGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGC 165011 |||||| | |||| ||||| || || || | || || || || || |||||||| Sbjct 1429 TGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC 1370 Query 165012 TGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTT 165071 ||| || | ||||||||||| ||||| || |||||||| || | |||| | ||||| Sbjct 1369 GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 1310 Query 165072 CCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTAT 165131 | | | ||||||||||| ||||||||||||||||||||||| || ||| || ||||| Sbjct 1309 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 1250 Query 165132 GCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCT 165191 ||||||||||||| || |||||| || ||||| || || || | || |||||| | Sbjct 1249 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTT 1190 Query 165192 GGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTAC 165251 | |||| || |||||||||| ||||| ||||||||||||||||| || ||||||||||| Sbjct 1189 GATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTAC 1130 Query 165252 TTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACAT 165311 ||| || | ||| | || ||||| || || || ||||| |||||||| || |||||||| Sbjct 1129 TTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTCCACAT 1070 Query 165312 GCTCGGCGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGT 165371 | | ||||| ||||| |||||||| || || || ||| |||||||||||| | || Sbjct 1069 GTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 1010 Query 165372 TACTTCCTCACTCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTT 165431 || || | || | || || || |||| || | || ||||| | || Sbjct 1009 AACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCAGGTTACAGATT 950 Query 165432 TGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCAT 165491 || ||||| ||||| || ||||| ||||| ||||| ||||| || || || || | || Sbjct 949 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTTGGCCGATTGAT 890 Query 165492 TTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCC 165551 |||||||| || ||||||||||| ||||| | || |||||||| || || ||||| Sbjct 889 CTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTGGCTGCTTGGCC 830 Query 165552 TGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGG 165611 |||||| |||||||||||||||||| | ||| ||||||| ||||| |||||| | || || Sbjct 829 TGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATGG 770 Query 165612 TTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGA 165671 |||||| |||||||| ||| | ||||||||||| | || ||| |||||||| Sbjct 769 TTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGA 710 Query 165672 CGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTT 165731 || | || |||||| || |||||||||||||||||||| ||||| ||||| ||||| Sbjct 709 TATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 650 Query 165732 CCCCCTCGACCTCGCTGCT 165750 ||| || ||||| |||||| Sbjct 649 CCCTCTAGACCTAGCTGCT 631 Score = 574 bits (636), Expect = 5e-159 Identities = 724/989 (73%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || || ||||||||||| ||||||||||| || | || |||| ||| ||| | ||| Sbjct 35982 GACCGATTCGTTTTTGTAGGTTGGTCTGGCCTATTGCTCTTTCCTTGTGCCTATTTCGCT 36041 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || |||||||| |||||| | || Sbjct 36042 TTAGGGGGTTGGTTCACAGGCACAACCTTTGTAACTTCATGGTATACCCATGGATTAGCC 36101 Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGC 166369 || ||| |||| || ||||| ||| | || || |||||||| ||||| || || Sbjct 36102 AGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCCGCAGTTTCGACTCCTGCTAATAG 36160 Query 166370 TATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 166429 | | | |||||| | | | || ||||||||||| || ||||| ||||| | || Sbjct 36161 TTTAGCGCATTCTTTGTTGTTACTATGGGGTCCTGAAGCACAAGGAGATTTTACTCGCTG 36220 Query 166430 GTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGG 166489 ||| ||| | || || |||||| | ||||||||||| ||||||||||| | ||||| || Sbjct 36221 GTGTCAATTAGGCGGTCTTTGGACTTTTGTTGCTCTACACGGTGCTTTCGGACTAATAGG 36280 Query 166490 TTTCATGCTTCGGCAGTTTGAAATCGCTCG-TCTAGTAGGTATTCGTCCGTACAATGCAA 166548 ||||||| | || || |||||| | ||||| ||| | | | || || || ||||||| Sbjct 36281 TTTCATGTTACGTCAATTTGAACTTGCTCGCTCTGTTCAAT-TGCGACCTTATAATGCAA 36339 Query 166549 TCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTC 166608 | || || |||| ||| |||||||| || ||| ||| || || || || || || |||| Sbjct 36340 TAGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTC 36399 Query 166609 AATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTT 166668 | || ||||||| || || || ||| || || | || || || |||||| |||||| Sbjct 36400 AGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCGATATTTCGATTCATCCTTT 36459 Query 166669 TCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTA 166728 | | ||||| || || || |||||| ||||||| |||||||||||||| || || ||| Sbjct 36460 TTTTCCAAGGGTTTCATAATTGGACATTGAACCCCTTTCATATGATGGGAGTTGCCGGTG 36519 Query 166729 TTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATC 166788 | | || | ||| |||| | |||||| ||||| | ||| ||||| || ||| | | | Sbjct 36520 TATTGGGCGCTGCTCTGCTATGTGCCATTCATGGCGCTACCGTAGAAAATACTTTATTTG 36579 Query 166789 AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCT 166848 |||||||||| ||||| || ||| || || || | || |||| |||||||||| Sbjct 36580 AAGATGGTGATGGTGCAAACACATTCCGTGCTTTTAACCCAACGCAAGCCGAAGAAACCT 36639 Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATA 166908 |||| ||||| || || ||||||| ||||||||| ||||| || |||| ||| |||| Sbjct 36640 ATTCGATGGTCACCGCTAACCGCTTTTGGTCTCAAATCTTTGGGGTTGCTTTTTCCAATA 36699 Query 166909 AGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCA 166968 | | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 36700 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 36759 Query 166969 TCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAA 167028 | || | | || || || || ||||| |||||||||||||| |||||||| ||| | Sbjct 36760 TTGGAGTAGTCGGCCTAGCCCTGAACCTACGTGCTTATGACTTCGTTTCCCAGGAAATCC 36819 Query 167029 GGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGG 167088 | ||||| || |||||||| ||||| || ||||| || || || ||||| || || |||| Sbjct 36820 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACAAAAAATATTCTTTTAAACGAGG 36879 Query 167089 GTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAG 167148 |||| ||| |||||||||| || ||||| |||||||| | | |||||||||| | Sbjct 36880 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 36939 Query 167149 AGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||||||| || | || |||||||| ||| Sbjct 36940 AGGTTCTACCCCGTGGAAACGCTCTTTAA 36968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561980470789120