Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq43779 129 4e-25
seq43778 118 7e-22
seq43799 116 2e-21
seq208088 113 3e-20
seq68153 104 2e-17
seq71848 102 5e-17
seq68514 86.0 4e-12
seq109229 84.2 1e-11
seq13742 84.2 1e-11
>seq43779
Length=2831
Score = 129 bits (142), Expect = 4e-25
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| ||| || ||||| ||||||||||| | ||| | || |||| ||
Sbjct 211 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGACCATCCTCG 270
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| |||||||| || |||| |||||||||| | || | ||| ||||| ||
Sbjct 271 AGCTGTTTACCGGCAAAGATGAGTCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 330
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||| ||| | || | ||| | || || || | ||||||||| ||
Sbjct 331 ATCTTGGCTTTTACGTTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 390
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| |||||||||||||||||||| |||||
Sbjct 391 CCGGTGAGAGTCTTCACAAAGATTTGCAT 419
Score = 98.7 bits (108), Expect = 6e-16
Identities = 137/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| | ||| | || |||| || || ||||| || |||||
Sbjct 1 TCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCCTCAAGTTGTTTGCCAGCAAAA 60
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | |||||||||| | || | || |||||||| |||||| ||||||
Sbjct 61 ATAAGCCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGAATCTTGGCTTTGACATTG 120
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | || || || | ||| || |||||||| ||||| ||||| |||
Sbjct 121 TCAATAGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTACA 180
Query 34971 AAGATCTGCATA 34982
||||||||||||
Sbjct 181 AAGATCTGCATA 192
>seq43778
Length=4696
Score = 118 bits (130), Expect = 7e-22
Identities = 156/214 (73%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||| | || || ||||| |||||||| || | ||| | || |||| ||
Sbjct 3978 AACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGGGTGCGCCCATCCTC 4037
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||||| || ||||| || || | ||||| ||| | || | ||| ||||||||
Sbjct 4038 AAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTG 4097
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
||||| |||||| || |||| || ||| | ||||| || | ||||||||
Sbjct 4098 GATCTTAGCTTTGAC--AT--TATCAATGGTATCAGAGCTTTCAACCTCAAGGGTTATGG 4153
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||||| |||||||||||||||||||| |||||
Sbjct 4154 TTTTTCCGGTGAGAGTCTTCACAAAGATTTGCAT 4187
>seq43799
Length=2218
Score = 116 bits (128), Expect = 2e-21
Identities = 156/215 (73%), Gaps = 8/215 (4%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| ||| ||||||||| ||||||||||| | ||| | | | |||| ||
Sbjct 96 AACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCATCTTC 155
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
||||| ||||| ||||| || || | ||||| ||| | || | |||||||||||
Sbjct 156 AAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTGTCTTG 215
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
||| || ||| || || | ||||| ||| ||||| || | || || |
Sbjct 216 AATTTTTGCTTTCAC--AT--TGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAATTG 271
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
||||||| ||||| || ||||||||||||||||||
Sbjct 272 TTTTTCCAGTGAGGGTTTTCACAAAGATCTGCATA 306
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| |||| || ||| ||||| ||||| ||||| | ||| | ||| |||| ||
Sbjct 553 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 612
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| ||||| |||||||| || || | |||||||||| | || | ||| ||||| || |
Sbjct 613 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGA 672
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || |||||| | || | ||| | || || || | ||| || || |||
Sbjct 673 ATTTTGGCTTTGACATTGTCAATGGTGTCAGAGCTTTCCACCTCAAGGGTGATAGTCTTT 732
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||| ||||| |||||||||||||||
Sbjct 733 CCAGTGAGGGTCTTTACAAAGATCTGCATA 762
>seq208088
Length=533
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | |||| || ||||||||||||||||| | |||| | || |||| ||
Sbjct 139 ACCAGGTGGAGTGTGGACTCCTTCTGAATGTTATAGTCGGCAAGGGTGCGGCCATCCTCA 198
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| ||||| || ||||| || || | |||||||||| | || | ||| |||||||| |
Sbjct 199 AGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTGTCCTGA 258
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
|| || |||||| | || | || | || || || | ||| || || |||
Sbjct 259 ATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCTTT 318
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||| ||||| |||||||||||||||
Sbjct 319 CCAGTGAGGGTCTTTACAAAGATCTGCATA 348
>seq68153
Length=714
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| | ||| |||| |||| || ||| ||||||||||| || |||| |
Sbjct 287 CCACCCCTCAGACGCAACACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCA 346
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | | | |||| |||||||| || || || || || | || |||||||| ||||
Sbjct 347 AGCGTCCTTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGA 406
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||| |||||||| ||||| |||||| | |||| || | ||||||
Sbjct 407 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCAACT 466
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|||| || || || |||||||| || || || || || ||||||||
Sbjct 467 TCGAGTGTGATCGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 513
>seq71848
Length=4061
Score = 102 bits (112), Expect = 5e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||||||||||| | ||| || | ||| | ||| ||| ||||| |||||||| || |
Sbjct 3800 TTCCTCCCCTCAGGCGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGG 3859
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
||| | || | || |||||||| || ||||| || || || | |||||||| | |
Sbjct 3860 CCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGG 3919
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932
| | ||| |||||||| |||||| || ||| | |||| || | ||| |
Sbjct 3920 GGATCCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCA 3979
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || | ||| || || || || || |||||||| || |||||||||||
Sbjct 3980 CCTCCAGGGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 4028
>seq68514
Length=8688
Score = 86.0 bits (94), Expect = 4e-12
Identities = 139/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 34790 TTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCA 34847
|||||| |||||||| || || | |||| | || | || || || || || ||||||
Sbjct 8180 TTCTTTTTGAATGTTGTAATCGGCCAAAG--TGCGGCCGTCTTCGAGTTGCTTCCCGGCA 8123
Query 34848 AATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACG 34907
|| || || || |||||||| |||| | ||||||||||| ||||| ||||||
Sbjct 8122 AAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 8063
Query 34908 GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967
| || | || | ||| || |||| ||| || || || || ||||| || |||
Sbjct 8062 TTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTC 8003
Query 34968 ACAAAGATCTGCATATTC 34985
||||| |||||||| |||
Sbjct 8002 ACAAATATCTGCATCTTC 7985
Score = 86.0 bits (94), Expect = 4e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814
|| ||||||| | ||| |||| |||| || || ||||||||||| || |||| |
Sbjct 8443 CCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCA 8384
Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874
|| | | | |||| |||||||| || || ||||| || || || ||||| || | ||
Sbjct 8383 AGCGTCCTTCCATCCTCCAGCTGCTTCCCTGCAAAGATCAGGCGCTGCTGATCAGGTGGG 8324
Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934
| ||| |||||||| || || |||| | | || | ||| | ||| ||
Sbjct 8323 ATCCCTTCCTTGTCCTGGATTTTTGCCTTGATGTTGTCAATGGTGTCAGAGCTCTCGACT 8264
Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| | || || || |||||||| || || || || |||||||||||
Sbjct 8263 TCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 8217
Score = 84.2 bits (92), Expect = 1e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || || | | | | || |||| || || || |||||||| ||
Sbjct 555 TCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 496
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| || | || | |||||||||||| ||||| ||||||
Sbjct 495 ATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 436
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| | ||| || |||| || || ||||| || || || || |||||
Sbjct 435 TCGATGGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCACG 376
Query 34971 AAGATCTGCATATT 34984
||||||||||||||
Sbjct 375 AAGATCTGCATATT 362
>seq109229
Length=2153
Score = 84.2 bits (92), Expect = 1e-11
Identities = 105/143 (73%), Gaps = 2/143 (1%)
Strand=Plus/Plus
Query 34748 ATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTA 34805
||||| |||||||||| | ||||| |||||||||| ||| || ||||||||||||
Sbjct 370 ATCATAGTTCCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTCTGAATGTTA 429
Query 34806 TAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGG 34865
|| || | ||| | || |||| |||| ||||| || ||||| || | || |||||
Sbjct 430 TAATCAGCAAGAGTACGGCCATCTTCCAATTGTTTCCCAGCAAAAATCAATCTCTGCTGA 489
Query 34866 TCTTGCGGCACCCCCTCCTTGTC 34888
|| | || | || ||||||||
Sbjct 490 TCCGGAGGAATGCCTTCCTTGTC 512
>seq13742
Length=406
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || |||| | | | || | || || ||||| |||||||| ||
Sbjct 176 TCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAG 235
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| | || | ||| |||||||| ||||| |||||
Sbjct 236 ATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATTG 295
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| |||| || | ||| || |||| || ||||| || || || | ||| ||||||
Sbjct 296 TCGATCGTGTCGAAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCACA 355
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 356 AAGATCTGCAT 366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323690028905664
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