Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq195423 657 0.0 seq9524 114 1e-20 >seq195423 Length=63734 Score = 657 bits (728), Expect = 0.0 Identities = 731/973 (75%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| |||||||||| Sbjct 647 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGATTAATA 706 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 707 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 766 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || ||||| ||||||| ||| | ||||| ||||| || || || Sbjct 767 AAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCAGATACCTACT 826 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||| ||| || || | ||||||| ||||||||| |||||| ||| Sbjct 827 ACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 886 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || ||||||||||| || |||||||||||||| || |||||| Sbjct 887 AAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGA 946 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| || || |||||||||| ||||| | ||| | | ||| Sbjct 947 CCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 1006 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 1007 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCT 1066 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 |||||||| || || |||||||||||||| || || |||||||| |||| |||| | ||| Sbjct 1067 AACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAATTG 1126 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| ||| ||||| |||| || || Sbjct 1127 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAG 1186 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 1187 ATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 1246 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||||||| | | |||||| Sbjct 1247 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 1306 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || ||||| |||| |||||| || | | Sbjct 1307 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT 1366 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || ||||| | ||| ||||| ||| | |||| | ||| Sbjct 1367 GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGCA 1426 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 |||||||| || |||||||| || | ||||| |||| || || ||||| ||||||||| Sbjct 1427 CCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCGTCA 1486 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| ||| || || || || ||||| ||| || | | || Sbjct 1487 ATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAA 1545 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 ||| || ||||| | | ||||||||||||| || | ||||| | |||| || | Sbjct 1546 AGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTGCTAGTTAT 1605 Query 84944 CCAATCACAGAAG 84956 ||| | ||||||| Sbjct 1606 CCAGTTACAGAAG 1618 >seq9524 Length=8324 Score = 114 bits (126), Expect = 1e-20 Identities = 218/315 (69%), Gaps = 22/315 (7%) Strand=Plus/Plus Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||| | | ||| || || | |||| || |||| ||| |||||| || Sbjct 593 ACAGGCCAAGCATCTAGGAAGAAATGTAAAGAATGAGAATTGCGGAAACCAGCATATCGG 652 Query 84225 AAG-AT-AAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTT 84282 ||| || || | | || || || | ||||||| ||||||| ||||||||||| ||| Sbjct 653 AAGTATCAATAAG-CCAAAATAAACATGAGCAGATACAATATCGTAAGTTTCCTCCTCTG 711 Query 84283 GACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAG 84342 |||| || |||| | | || | || |||||||||| ||||| ||||| | | || Sbjct 712 GACCAAATCTGTATCTTTCCTTGGGAGATTCATTTTCTGTGGTTTCCCGGATCAAACTAG 771 Query 84343 AAGTGA-CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGC---- 84397 | || | ||||| |||| ||||| || ||| || || || ||||||| Sbjct 772 AGGTTACCAAGT-AACCGTGCAT---AGGGAA-------CCGCCAAACGCACCAGCTAAG 820 Query 84398 ---AACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAG 84454 | || |||||||| || | ||||| ||| ||| | || || |||||||| |||| Sbjct 821 CCTTAGTCATAACATGTGGAATGAATGCACAAGAATGCTGTGCTCAGCCTGGAATACAAT 880 Query 84455 CATGTAGTTGAACGT 84469 |||| ||||||| || Sbjct 881 CATGAAGTTGAAAGT 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569570576271040