Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq80422 118 1e-21
seq2110 118 1e-21
seq38305 89.7 6e-13
seq102355 82.4 9e-11
>seq80422
Length=4294
Score = 118 bits (130), Expect = 1e-21
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418
|||||| ||||| | ||| | |||||||| ||| | || | | |||||||||||| ||
Sbjct 1774 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 1715
Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478
||| ||| | || || ||||| ||||||||||||| | || | || || || |||
Sbjct 1714 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 1655
Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538
| ||| ||||| || || ||| || | ||||||| || | || ||||| ||
Sbjct 1654 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 1595
Query 48539 TCCTTCTATACTATCATCTATCATA 48563
|||||| |||||||||||| |||||
Sbjct 1594 TCCTTCGATACTATCATCTTTCATA 1570
Score = 91.5 bits (100), Expect = 2e-13
Identities = 108/144 (75%), Gaps = 2/144 (1%)
Strand=Plus/Minus
Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658
|||||| | |||||| | ||| ||||||||||| | |||||| | | || | || |
Sbjct 1444 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 1385
Query 48659 ATATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTA 48717
||| ||| |||| ||||||| ||||| | ||| || || || ||||| || | ||| |
Sbjct 1384 GTATATTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 1326
Query 48718 ACATATATTGAGGTCTTTCAACAA 48741
|||||| ||||||||||| ||||
Sbjct 1325 ACATATGCTGAGGTCTTTCTACAA 1302
>seq2110
Length=919
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
||||||||||| | ||| | |||||||| ||| | || | | |||||| ||||| |||
Sbjct 741 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 682
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| ||| | ||||| ||||| |||||||||||| | || | || || || |||
Sbjct 681 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 622
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| ||||| || || ||| || | ||||||| || | |||||||| |||
Sbjct 621 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 562
Query 48540 CCTTCTATACTATCATCTATCAT 48562
||||| |||||||||||| ||||
Sbjct 561 CCTTCAATACTATCATCTTTCAT 539
Score = 89.7 bits (98), Expect = 6e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659
||||| | |||||| | ||| ||||||||||| |||||||| | || | || |
Sbjct 376 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 317
Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718
||||||| ||| ||||||| || || | ||| || || || | || || | ||| ||
Sbjct 316 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 258
Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778
||||| ||| |||||||| |||| ||| | | ||||| || || || | ||||
Sbjct 257 CATATGTTGGGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAG 198
Query 48779 TGTTTTAAAACCAAAATA 48796
||||| || ||||||||
Sbjct 197 GGTTTTGAAGCCAAAATA 180
>seq38305
Length=3123
Score = 89.7 bits (98), Expect = 6e-13
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419
|| |||||||| | ||||| ||||| | ||| | ||| | ||| |||||||| |||
Sbjct 2308 CCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 2249
Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479
|| || ||||| ||||| || ||||| || || | |||||| ||| ||
Sbjct 2248 TTGGAAGATCCATTTGTTCCATGGATGTAACTACCTGAGGCACGGATATTATGAATGGAG 2189
Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539
| ||| || || || || ||| ||| | ||||||| || ||||||||||| ||
Sbjct 2188 AGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTCCTTCAGGGTATCATATATG 2129
Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581
||||| || || |||||| |||| || ||||| || |||
Sbjct 2128 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 2087
>seq102355
Length=2235
Score = 82.4 bits (90), Expect = 9e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020
|| ||||| |||||||| || ||||| |||||| ||| | || || || || || |||
Sbjct 1044 CAAGCAAAGTCACAATGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 985
Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055
|| ||||||||||| || ||||| | |||||||||
Sbjct 984 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATAT 950
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560433097456320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |