Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq195423 471 1e-128 >seq195423 Length=63734 Score = 471 bits (522), Expect = 1e-128 Identities = 701/986 (71%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| ||||| || || | || ||||| || || | Sbjct 1617 TTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 1558 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| | |||||||| || || | Sbjct 1557 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTC 1500 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| || || || ||||| || ||||| || || || | || ||||||| Sbjct 1499 CTCCAGTAGATATTGACGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACA 1440 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | | || | ||| || || || | ||||||||||||| Sbjct 1439 ATATTATTTCTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 1380 Query 26040 TCTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATT 26098 | |||||||| |||| | | || || ||| ||||||||||||| || ||| | || ||| Sbjct 1379 TATGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATT 1321 Query 26099 ATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTAC 26158 | | ||||||||| | || ||||| || || | |||||||||| || | Sbjct 1320 GTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 1261 Query 26159 AGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTC 26218 | || || ||| | || ||||| |||||||||| |||| || | | ||||| Sbjct 1260 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCAGCGACT 1201 Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || ||||| | || || |||| ||||| |||||| |||||| |||||||| || Sbjct 1200 GCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 1141 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| || || ||| | |||||||| || || || || || || |||||| Sbjct 1140 ATCTCTGGTACTTTCAATTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 1081 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 |||||||| ||| || || ||||| || ||||| || | || ||| ||||||||| Sbjct 1080 CCATTCCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCAT 1021 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||||| || || | || ||||| ||||| | | || ||| Sbjct 1020 GGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGCA 961 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518 || || | || || ||||| ||||| || |||||||| || ||||| ||||| || ||| Sbjct 960 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCACGGTTATTTT 901 Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578 || |||| || || || ||||| ||||| || || |||||| | |||||||| || Sbjct 900 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCCTG 841 Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638 ||| ||||||| || || || || ||| | || || | ||||| |||| ||||| || Sbjct 840 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 781 Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698 ||| |||||||||| || || ||||| || ||||| ||| | | || |||| | Sbjct 780 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 721 Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758 || ||||||||| | | || || |||||||| || | ||||||||||| || |||||| Sbjct 720 ACCTGGGCTGATATTATTAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 661 Query 26759 GCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || || ||| |||| Sbjct 660 GCTCATAACTTCCCTCTAGACCTAGC 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146310864232512