Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0
01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq195423 560 3e-155
>seq195423
Length=63734
Score = 560 bits (620), Expect = 3e-155
Identities = 721/990 (73%), Gaps = 6/990 (1%)
Strand=Plus/Plus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 631 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 690
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310
||| ||||| || | | ||| ||||| || || | | ||| | ||||| ||
Sbjct 691 GTTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 750
Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370
|| || ||||| || || || || | || |||||||||||| || || | || ||
Sbjct 751 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 810
Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430
| ||| || | || || ||||||| ||||||||||||||||||| ||| ||||||
Sbjct 811 GAACCAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTT 870
Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490
|| |||||||| |||||||| | || ||||| || || ||||| || || || |||||
Sbjct 871 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATA 930
Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550
|||||||||||||| |||||| | || || || ||| | | || |||||
Sbjct 931 AGTTTCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTC 990
Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610
| || | ||| || || | |||||||||||| ||| | | || |||||
Sbjct 991 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAA 1050
Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670
||| ||||| || || | ||||||||| || ||||||||||| ||||| || ||||||||
Sbjct 1051 TACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1110
Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730
||| | ||| || || |||||||||||||| || ||||||||||||||| ||||||||
Sbjct 1111 TACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCC 1170
Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789
|| |||| ||||| | || || || | ||| ||||| ||||| || ||||||||||
Sbjct 1171 TTGACCGATTGGGTAGATCAAGAAAACAGCAGT-CGCTGCTGCAACAGGAGCTGAATATG 1229
Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849
| || |||||| || ||||| || | | | ||||||||||||| | || |||| ||
Sbjct 1230 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 1289
Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909
|| || | ||||| | |||||| | || | || | || || || |||||||| |
Sbjct 1290 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 1349
Query 5910 GCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967
||||||||| | ||| || |||||||| || || || || || || || || ||
Sbjct 1350 ACCATTCATCAACGGAT--GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGC 1407
Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027
|| | || | || || || || || || ||||||||||| ||||||||||| | ||
Sbjct 1408 AGAAGTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAAC 1467
Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087
|||||||| || ||||| || || ||||| || ||||| | ||| || | |||||| |
Sbjct 1468 AGGTTCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATAC 1527
Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147
|| ||||||||| || | | || ||||| || ||||||||||| || | || |||||
Sbjct 1528 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCG 1587
Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
||| | |||||||| | ||||| ||||||
Sbjct 1588 GTTTTCAGTGCTAGTTATCCAGTTACAGAA 1617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152217289463568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |