Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq195423 522 8e-144 >seq195423 Length=63734 Score = 522 bits (578), Expect = 8e-144 Identities = 710/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 635 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 694 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||||| |||| ||| |||||||| || | || | || | |||||| || || Sbjct 695 GCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 754 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | || |||||||||||| | || | ||| || | | Sbjct 755 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 814 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||||||||||||||||| ||| ||| || || Sbjct 815 CAGATACCTACTACAGGCCAAGCAGCCAGGAAGAAATGTAAAGAACGAGAATTGTTGAAA 874 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || || ||||| || || || ||||| || Sbjct 875 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCGTGAGCAGCTACGATATTATAAGTT 934 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || || ||||||| | || ||||| | Sbjct 935 TCTTCCTCTTGACCGAATCTGTAACCTGCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 994 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 995 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAGCCGCCGAAT 1051 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || || || | ||| ||||| || ||||||||||| ||||| || ||||| || Sbjct 1052 ACACCAGCTACGCCTAACATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 1111 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| ||| ||||||||||| || || || || ||||||||||||||||| ||||| ||| Sbjct 1112 ACAATCATGAAATTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCT 1171 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || || | ||||||| ||||| |||||| |||||||||||||| |||||||| || Sbjct 1172 TGACCGATTGGGTAGATCAAGAAAACAGCAGTCGCTGCTGCAACAGGAGCTGAATATGCA 1231 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| || || | ||||||||||||| | || |||| |||| Sbjct 1232 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 1291 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 | | || | | ||||| | ||||| || | ||| || || || || || ||| Sbjct 1292 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 1351 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 || || || | || ||| |||||||| || ||||| || || | ||| || || ||| Sbjct 1352 CATTCATCAACGGATGCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAA 1411 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || | || || || || || || ||||||||||| |||| | ||| || ||||| Sbjct 1412 GTAGGAATAATCGCACCAGAAATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGT 1471 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 ||||||||||| || ||||| || ||||| ||||||| || || || | |||| | | Sbjct 1472 TCACGAATACCGTCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAA 1531 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| || || | | ||||||||| | || |||||||| || | || |||||||| Sbjct 1532 GTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTT 1591 Query 26410 TTTGTACTTGTAACCCAGTCACATAA 26435 | || || || | ||||| ||| || Sbjct 1592 TCAGTGCTAGTTATCCAGTTACAGAA 1617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151563147285088