Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq68470 109 4e-19 seq68152 102 6e-17 seq43088 100 2e-16 seq68514 98.7 8e-16 seq199182 96.9 3e-15 seq43778 89.7 4e-13 seq39294 87.8 1e-12 seq43799 82.4 6e-11 seq13742 82.4 6e-11 >seq68470 Length=2690 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| ||| || ||||| || ||||||| || | | || Sbjct 1336 AGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCTAAAGTACGG 1277 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || | ||| ||||| | |||| || ||| Sbjct 1276 CCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCC 1217 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | || ||||| ||||||||||| ||| Sbjct 1216 TTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTA 1157 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || ||||| |||||||| Sbjct 1156 ATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 1119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||||| | | || |||| |||| ||||| || ||||| Sbjct 626 CTCCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAA 567 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| | ||| || |||| ||| | ||||||||||| |||||| || || Sbjct 566 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTT 507 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||| | || ||||| || || || | ||||| || Sbjct 506 ATCGATCGTGTCTGAGCTCTCAACCTCGAGGGTGATCGTCTTCCCGGTTAGGGTTTTGAC 447 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 446 AAAGATCTGCAT 435 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | || | || || || |||||||||||| |||||||| | Sbjct 890 GCCTCCCCTGAGACGAAGAACAAGGTGGAGAGTTGACTCTTTTTGAATGTTGTAATCGGC 831 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 | | || | || ||||||||||||||||| || |||| || || || |||| || Sbjct 830 CAAGGTGCGGCCATCTTCCAACTGCTTACCGGCGAAGATCAATCTTTGCTGGTCCGGCGG 771 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||| ||||| ||||| || || | | | | || || |||||| Sbjct 770 GATCCCCTCTTTGTCCTGGATCTTGGCCTTGACGTTATCAATCGTATCCGAACTCTCCAC 711 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || || || | ||||| || || |||||||| Sbjct 710 CTCCAGAGTGATCGTCTTCCCAGTTAGGGTTTTGACGAAGATCTGCAT 663 >seq68152 Length=1216 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| |||||||||| ||| | || |||| || | ||| Sbjct 958 ATGGAGAGTGGACTCCTTCTGAATGTTGTAATCAGCAAGAGTACGGCCGTCCTCAAGCTG 1017 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCT 48681 ||| || || || || || | ||| ||||| | ||||| | || |||||||| ||||| Sbjct 1018 CTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATC-CCTTCCTTGTCCTGAATCT 1076 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | || ||| | | | || || ||||||||||| |||||||| || || | Sbjct 1077 TGGCCTTGACATTGTCAATGGTATCCGAACTCTCCACCTCCAGGGTAATCGTCTTCCCGG 1136 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||||||||| Sbjct 1137 TCAATGTCTTGACAAAAATCTGCAT 1161 >seq43088 Length=1044 Score = 100 bits (110), Expect = 2e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 ||||| ||| |||||||||||||| || || ||| ||||| |||| || || Sbjct 171 GATTTTCTCAATTATTAATTGAGCAATTCTATCACCCACTTTCACCTCAAAATCAACATC 230 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 |||||||| |||| | ||| || || ||||||||||||| |||| ||||| || || Sbjct 231 AGAATGATTAAACAAAATCACCCCAACAGGACCCCTGTAATCCGCATCAATCACCCCGGC 290 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 |||||||| || ||||||| ||| ||||| || | ||||| Sbjct 291 TCCCACGTCCATTGAGTGCTTCCACGCCAGTCCTGATCTCGGCGC 335 >seq68514 Length=8688 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| ||||| || || ||||||| || | || |||| || | ||| Sbjct 1252 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 1193 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || || || || || | ||| ||||| | |||| || |||||||| |||||| Sbjct 1192 CTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 1133 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | | || || ||||||||||| ||||| || || || || Sbjct 1132 TGCCTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAGT 1073 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || |||||||| ||||| Sbjct 1072 CAAAGTCTTGACAAAAATTTGCAT 1049 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| |||||||| || ||||||| || | | || | || || | ||| Sbjct 8648 ATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAAAGTACGGCCATCCTCAAGCTG 8589 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| || || | ||| ||||| | |||| || ||||| || |||||| Sbjct 8588 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 8529 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || ||||||||||| ||||| ||||| || || Sbjct 8528 AGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAGGGTAATTGTTTTCCCAGT 8469 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | ||| || || ||||||||||| Sbjct 8468 AAGAGTCTTGACGAAAATCTGCAT 8445 >seq199182 Length=237 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 9089 TTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACA 9148 ||||||||||||| || || ||| ||||| ||||| || || |||||||| |||| Sbjct 1 TTAATTGAGCAATTCTATCACCCACTTTCACCACAAAATCAACATCAGAATGATTAAACA 60 Query 9149 GCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGA 9208 | ||| || || |||||||||||| |||| ||||| || || |||||||| || Sbjct 61 AAATCACCCCAACAGGGCCCCTGTAATCCGCATCAATCACCCCGGCTCCCACGTCCATTG 120 Query 9209 AGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 ||||||| ||| ||||| || | ||||| Sbjct 121 AGTGCTTCCACGCCAGTCCCGATCTTGGCGC 151 >seq43778 Length=4696 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || |||||||| |||| | | | || | || |||| |||||| |||||||| Sbjct 2628 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAA 2687 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| ||||| | |||| || |||||||| || || || ||| Sbjct 2688 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 2747 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||||| || || |||||||| ||||| || || || Sbjct 2748 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTGATGGTTTTTCCTGTCAATGTCTTCAC 2807 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 2808 GAAAATCTGCAT 2819 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| |||| |||| | || Sbjct 3514 AGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGG 3573 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || || ||||| |||| || ||| ||||| | || | ||||||| Sbjct 3574 CCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCC 3633 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || || ||||||| || Sbjct 3634 TTGTCCTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTT 3693 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||||| |||||||||||||| Sbjct 3694 ATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 3731 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||||||| | ||| || || ||||| |||||||| | || | | | || Sbjct 2835 CAACACCAAATGCAATGTGGATTCCTTCTGAATGTTGTAATCTGCAAGGGTCCTCCCATC 2894 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | |||||| || ||||| |||| | ||| || || | |||| ||||||||| || Sbjct 2895 TTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGAATGCCCTCCTTATC 2954 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || ||| | | | | || || ||| ||||||| || || || Sbjct 2955 TTGGATCTTGGCCTTCACATTATCAATCGTGTCCGAACTCTCTACCTCCAGAGTGATTGT 3014 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || | ||| || |||||||| ||||| Sbjct 3015 TTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 3047 >seq39294 Length=652 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 9089 TTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACA 9148 ||||||||||||| || || ||| ||||| |||| || || |||||||| |||| Sbjct 652 TTAATTGAGCAATTCTATCACCCACTTTCACCTCAAAATCAACATCAGAATGATTAAACA 593 Query 9149 GCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGA 9208 | ||| || || |||||||||||| | || ||||| || || |||||||| || Sbjct 592 AAATCACCCCAACAGGGCCCCTGTAATCCGCGTCAATCACCCCGGCTCCCACGTCCATTG 533 Query 9209 AGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 ||||||| ||| ||||| || | ||||| Sbjct 532 AGTGCTTCCACGCCAGTCCCGATCTTGGCGC 502 >seq43799 Length=2218 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || || ||||| |||| ||| | ||| Sbjct 316 AGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGA 375 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || |||||||| || | | ||||||||| | || | ||||||| Sbjct 376 CCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCC 435 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || || ||||||| || Sbjct 436 TTGTCCTGGATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTT 495 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||||| |||||||||||||| Sbjct 496 ATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 533 >seq13742 Length=406 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || |||||||| | | | || |||| || | |||||| ||||| || Sbjct 175 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 234 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| || |||| |||| || |||||||| ||||| || ||| Sbjct 235 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 294 Query 48695 ACCCACAGACTCTGACGC-CTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | | || || || ||||||||| | || || || || || ||||||||||| | Sbjct 295 GTCGATCGTGTC-GAAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCA 353 Query 48754 CAAAAATCTGCATC 48767 |||| ||||||||| Sbjct 354 CAAAGATCTGCATC 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379830377247624