Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20x_20paradisi_20x_20Citrus_20trifoliata_20[genbank_20GCA_5F0 01929425.1_202017-01-03] 238,488 sequences; 265,533,993 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq89547 113 8e-20 >seq89547 Length=5293 Score = 113 bits (124), Expect = 8e-20 Identities = 333/507 (66%), Gaps = 11/507 (2%) Strand=Plus/Plus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | ||| | || ||||||||| || || || ||| || |||||||| Sbjct 2902 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 2961 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || |||||||| || |||||| | | |||||||| || ||| | | | | | Sbjct 2962 ATCCCCTCCACGCAAGCAAACGCGATTAA--TCTCTCCGCAA-AAGTCTCCGAGCCGTCG 3018 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGG 48370 ||||| | |||||| || ||||| || ||| || | |||||| ||||| | Sbjct 3019 ATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGA 3078 Query 48371 AAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTAC 48427 ||||| ||||| || | | ||| | || || || ||| | |||| Sbjct 3079 AAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTAC 3135 Query 48428 ATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAAC 48487 || || ||||| | ||||| || ||||||||||| ||||||||||| | ||||| Sbjct 3136 ATTTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCGGCG 3195 Query 48488 ACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGC 48546 ||||| || || || ||| || ||| || || ||||| ||| || || || || || Sbjct 3196 ACCTGGACCTCCGTCATGAACCT-TCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGC 3254 Query 48547 AGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCA 48606 ||||||||||| || || || | | ||| || ||||| ||| || || | ||| Sbjct 3255 TGCAAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCA 3314 Query 48607 GCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTT 48666 | | | |||| || || ||||| || | ||||| || ||||| ||||| Sbjct 3315 GTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTT 3374 Query 48667 TTTGTACATGCCCCATATGTCCGGATA 48693 |||||||| |||| || | ||||| Sbjct 3375 CTTGTACATTTCCCAAATTTGTGGATA 3401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928755807569920